6W8D: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 31-May-2023 number of released structures: 12820

Search for released structures

NDB ID: 6W8D PDB ID: 6W8D

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	EE_DA424DT425:DA444DT445_FF	-0.146	0.39	3.409	-1.435	-4.433	30.541	1.622	-0.015	3.324	-8.355	2.704	30.886
1	9	EE_DA433DA434:DT435DT436_FF	-1.007	-0.054	3.329	-4.625	10.193	33.031	-1.701	0.952	3.277	17.32	7.858	34.826
1	10	EE_DA434DT435:DA434DT435_FF	0.111	-1.281	3.118	-9.628	-18.381	20.526	1.882	-2.542	2.975	-40.553	21.242	29.108
1	13	EE_DA437DG438:DC431DT432_FF	-1.414	-0.238	3.951	-14.25	-1.03	37.754	-0.195	-0.027	4.201	-1.526	21.12	40.274
1	15	EE_DA439DA440:DT429DT430_FF	-0.337	-0.378	2.675	-5.43	-1.318	34.744	-0.463	-0.112	2.707	-2.19	9.021	35.177
1	16	EE_DA440DC441:DG428DT429_FF	0.519	-0.829	3.406	8.555	-7.938	29.926	0.066	0.749	3.519	-14.688	-15.829	32.073
1	18	EE_DA444DT445:DA424DT425_FF	0.372	-0.229	3.141	1.629	-0.26	28.149	-0.411	-0.398	3.159	-0.535	-3.345	28.197
1	1	EE_DC423DA424:DT445DG446_FF	-0.375	1.525	3.761	-2.864	19.77	33.607	-0.802	0.115	4.04	31.026	4.495	38.949
1	7	EE_DC431DT432:DA437DG438_FF	0.671	2.409	2.722	1.753	6.893	34.998	3.025	-0.865	3.154	11.318	-2.879	35.691
1	17	EE_DC443DA444:DT425DG426_FF	-2.052	2.027	3.409	-6.525	-1.044	45.771	2.679	2.014	3.608	-1.335	8.338	46.22
1	4	EE_DG428DT429:DA440DC441_FF	-1.013	-0.574	3.221	1.027	-13.993	24.412	2.203	2.335	3.05	-30.12	-2.21	28.104
1	14	EE_DG438DA439:DT430DC431_FF	-0.445	-1.26	3.081	5.855	-5.895	38.379	-1.201	1.335	3.135	-8.841	-8.782	39.235
1	3	EE_DT425DG426:DC443DA444_FF	1.866	1.875	3.662	3.796	-8.258	41.45	3.511	-2.158	3.395	-11.502	-5.287	42.392
1	5	EE_DT429DT430:DA439DA440_FF	0.345	0.021	3.029	8.484	6.01	36.795	-0.681	0.478	3.0	9.295	-13.122	38.187
1	6	EE_DT430DC431:DG438DA439_FF	0.688	-0.123	3.416	5.52	9.584	27.431	-2.402	-0.105	3.265	19.249	-11.086	29.537
1	8	EE_DT432DA433:DT436DA437_FF	-1.051	1.58	3.525	3.144	13.237	41.272	0.667	1.772	3.751	18.193	-4.321	43.363
1	11	EE_DT435DT436:DA433DA434_FF	0.859	0.047	3.378	4.541	-12.977	47.403	1.072	-0.676	3.322	-15.758	-5.514	49.246
1	12	EE_DT436DA437:DT432DA433_FF	-0.047	0.077	3.808	-3.913	6.485	48.677	-0.474	-0.285	3.781	7.813	4.714	49.227
1	19	EE_DT445DG446:DC423DA424_FF	0.248	1.821	3.186	2.949	2.199	37.555	2.533	-0.005	3.293	3.406	-4.566	37.729

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.