A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Apr-2021 number of released structures: 11277
Search for released structures

NDB ID: 6WBR  PDB ID: 6WBR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13B_A3:DT18_C0.009-0.104-0.165-12.978-3.0424.832
18B_A8:DT13_C0.146-0.1710.011-7.705-9.299-0.122
19B_A9:DT12_C0.201-0.0520.073-1.234-7.0540.952
111B_A11:DT10_C-0.006-0.1240.158-6.093-11.2486.654
119B_A19:DT2_C-0.094-0.1050.1481.0493.5034.012
128B_A28:U41_B0.010.5720.246-2.755-1.008-5.897
133B_A50:G68_B-7.27-5.1830.019-22.64211.871-15.551
135B_A52:U66_B0.3450.0060.037-2.476-2.742-11.953
140B_A77:U92_B0.017-0.080.2015.5363.8395.079
17B_C7:DG14_C0.108-0.1080.132-7.105-6.683-0.192
113B_C13:DG8_C0.237-0.1470.293-0.478-5.731-2.845
114B_C14:DG7_C0.12-0.052-0.157-16.607-1.193.851
122B_C22:G47_B0.114-0.1680.1983.653-5.5271.592
130B_C30:G39_B1.3240.139-0.216-4.092-6.713-4.09
131B_C31:G38_B-0.8610.635-0.3363.051-11.647-11.688
136B_C53:G65_B0.105-0.3980.4133.763-7.408-8.594
137B_C54:G64_B0.0-0.1760.6735.986-12.807-14.22
138B_C55:G63_B0.24-0.2250.0473.292-14.236-7.251
141B_C78:G91_B0.036-0.13-0.1344.575-1.170.014
142B_C79:G90_B0.14-0.1070.0921.77-3.0552.392
143B_C80:G89_B0.121-0.1960.009-2.1440.382-1.692
144B_C81:G88_B0.052-0.623-1.2755.8025.296-8.043
145B_C82:G87_B0.111-0.1680.00219.031-1.016-2.534
12B_G2:DC19_C-0.243-0.106-0.59-7.498-7.2892.669
15B_G5:DC16_C-0.203-0.148-0.016-1.447-7.54-1.093
16B_G6:DC15_C-0.191-0.0750.058-3.767-8.0781.497
110B_G10:DC11_C-0.4395.4490.368-4.809-5.586-79.841
116B_G16:DC5_C-0.317-0.2020.027-8.0125.863.372
117B_G17:DC4_C-0.222-0.182-0.018-6.191-7.636-1.04
121B_G21:C48_B-0.267-0.1350.103-0.428-6.089-2.221
124B_G24:U45_B-1.919-0.3210.0881.004-10.9646.8
125B_G25:C44_B-0.151-0.053-0.234-2.939-5.8063.84
126B_G26:C43_B-0.281-0.14-0.024-10.72-9.8764.198
127B_G27:A42_B4.1311.6850.489-1.2324.59932.667
129B_G29:C40_B-0.099-0.1760.160.657-7.4163.851
134B_G51:C67_B-0.173-0.099-0.049-3.782-4.360.633
11B_GTP1:DC20_C-0.330.249-0.7-16.205-4.235-9.252
14B_U4:DA17_C-0.034-0.0390.217-6.032-1.0875.233
112B_U12:DA9_C-0.05-0.0970.309-2.833-5.2891.957
115B_U15:DA6_C-0.1220.014-0.063-13.4347.385-0.52
118B_U18:DA3_C-0.118-0.2130.277-10.8470.8726.679
120B_U20:DA1_C0.075-0.1970.0536.9222.1376.858
123B_U23:A46_B-0.056-0.09-0.1818.297-2.973-1.454
132B_U32:A37_B0.101-0.302-1.085-5.162-2.984-11.289
139B_U57:G60_B2.8680.4241.847-13.78-16.368-58.035
150C_DA-6:DT6_D0.221-0.1110.2684.4784.594-3.231
154C_DA-2:DT2_D0.076-0.142-0.279-1.725-8.7152.768
146C_DC-10:DG10_D0.184-0.171-0.069-5.747-3.5610.582
148C_DC-8:DG8_D0.202-0.154-0.09-1.3080.1051.728
149C_DC-7:DG7_D0.185-0.1950.247-4.279-1.6012.919
147C_DG-9:DC9_D-0.196-0.087-0.103-6.174-3.523.82
151C_DG-5:DC5_D-0.193-0.1560.3612.602-4.8-1.238
152C_DG-4:DC4_D-0.114-0.170.293.436-8.386-0.347
153C_DT-3:DA3_D-0.043-0.1650.151-1.636-3.7384.229
155C_DT-1:DA1_D0.101-0.3210.0565.117-4.325.354

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.