A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6X5M  PDB ID: 6X5M 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
115R_A16:A19_R60
112R_A22:U12_R120
111R_A23:U11_R120
114R_C20:G14_R119
118R_C38:G2_A119
119R_C39:G1_A119
11R_G1:C35_R119
12R_G2:C34_R119
13R_G3:C33_R00
113R_G21:C13_R119
110R_G24:C10_R119
19R_G25:C9_R119
117R_G37:C3_A10
14R_U4:A8_A10
16R_U6:A10_A10
17R_U7:A11_A10
18R_U26:A12_A120
15R_U29:A9_A120
116R_U36:A4_A120
134r_A16:A19_r60
128r_C9:G25_r119
129r_C10:G24_r119
132r_C13:G21_r119
137r_C38:G2_a00
138r_C39:G1_a119
120r_G1:C35_r119
121r_G2:C34_r119
122r_G3:C33_r119
133r_G14:C20_r119
136r_G37:C3_a00
130r_U11:A23_r120
131r_U12:A22_r120
135r_U36:A4_a323
123a_A8:U30_r120
124a_A9:U29_r120
125a_A10:U6_r10
126a_A11:U27_r120
127a_A12:U26_r120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)