A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6X5M  PDB ID: 6X5M 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
115R_A16:A19_R2.302-4.3220.919-38.368-6.236-91.079
112R_A22:U12_R-0.443-0.0270.026-12.258-17.3233.275
111R_A23:U11_R1.0220.2290.202-4.737-9.0492.469
114R_C20:G14_R0.878-0.0960.2836.9-22.2893.507
118R_C38:G2_A0.0080.013-0.00815.35-10.87310.504
119R_C39:G1_A-0.6550.429-0.45311.63214.80110.144
11R_G1:C35_R-0.734-0.6020.116-1.857-1.535-2.656
12R_G2:C34_R-0.306-0.279-0.1440.109-9.361-11.763
13R_G3:C33_R0.619-3.2920.2666.0489.85298.171
113R_G21:C13_R-0.828-0.3780.131-1.077-11.4257.213
110R_G24:C10_R-0.406-0.3960.073-7.653-17.647-1.529
19R_G25:C9_R0.366-0.2870.521-8.201-7.522-3.765
117R_G37:C3_A1.005-0.029-0.334-7.204-10.712-22.52
14R_U4:A8_A-0.370.12-0.208-4.409-3.02226.528
16R_U6:A10_A-1.3440.506-0.546-4.598-5.04942.151
17R_U7:A11_A-1.5630.2860.2771.8645.77739.461
18R_U26:A12_A-0.127-0.157-0.36111.7699.463-10.567
15R_U29:A9_A-1.189-0.187-0.17614.717-14.526-10.011
116R_U36:A4_A-0.0030.2511.023-6.017-23.811.37
134r_A16:A19_r3.249-3.6030.846-34.549-10.747-76.862
128r_C9:G25_r0.1330.0520.35410.572-3.7992.821
129r_C10:G24_r0.78-0.0430.1787.798-19.1646.952
132r_C13:G21_r0.216-0.1160.0711.948-1.9334.244
137r_C38:G2_a-0.206-4.788-0.12216.296.04686.167
138r_C39:G1_a0.555-0.492-0.5345.2371.534-7.411
120r_G1:C35_r-0.915-0.377-0.327-5.225-8.016-7.434
121r_G2:C34_r0.943-0.1310.196-1.099-3.676-4.061
122r_G3:C33_r-0.237-0.420.028-4.634-11.3932.601
133r_G14:C20_r-0.217-0.0250.011-10.925-15.651-3.628
136r_G37:C3_a0.319-2.6730.65324.22215.627116.42
130r_U11:A23_r-0.306-0.0130.094-6.71-10.439-2.272
131r_U12:A22_r-0.1020.071-0.2285.809-7.464-1.943
135r_U36:A4_a-2.1374.7370.828-12.1-7.672-84.029
123a_A8:U30_r0.719-0.4080.051-16.892-4.84-11.773
124a_A9:U29_r-0.192-0.3510.37-5.529-7.515-3.789
125a_A10:U6_r1.1740.479-0.3896.103-4.39444.664
126a_A11:U27_r-0.695-0.656-0.05-3.797-8.734-2.184
127a_A12:U26_r-0.322-0.165-0.817-11.4354.19-6.063

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.