A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: 6XQE  PDB ID: 6XQE 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
18001A_4OC1920:G1910_1A10
18111A_5MC1942:U1940_1A00
111A_A6:U2897_1A120
131A_A8:U2895_1A120
1121A_A21:U519_1A120
1181A_A28:G512_1A911
1281A_A38:U441_1A120
1331A_A43:U434_1A120
1671A_A49:U120_1A323
1541A_A64:U90_1A00
1781A_A78:U108_1A120
1841A_A84:G102_1A1011
1661A_A118:G51_1A911
1651A_A119:A52_1A72
1431A_A190:U206_1A424
1441A_A191:A204_1A82
1991A_A199:U2431_1A00
11001A_A216:U431_1A424
11201A_A221:U427_1A424
11011A_A222:G232_1A00
11031A_A225:U230_1A120
11181A_A233:A429_1A21
11051A_A251:G247_1A1011
11091A_A255:U243_1A424
11101A_A256:A241_1A82
11111A_A257:G240_1A1011
11161A_A262:U235_1A120
11251A_A270:U271Y_1A424
11681A_A282:U358_1A424
11741A_A289:G351_1A1011
11791A_A294:G344_1A100
11851A_A299:G338_1A00
11841A_A322:U339_1A50
11361A_A363A:U272I_1A120
12151A_A374:G400_1A1011
12161A_A401:U373_1A424
12171A_A402:A423_1A00
11541A_A412:A2411_1A100
11511A_A415:U2408_1A120
1241A_A454:G446_1A610
12181A_A457:A471_1A82
12201A_A460:G469_1A1011
12241A_A492:G488_1A00
12291A_A497:A482_1A50
11971A_A501:A477_1A72
11991A_A503:A479_1A21
11981A_A505:A480_1A21
12311A_A529:U2041_1A424
12421A_A536:U557_1A120
12511A_A575:U566_1A120
12541A_A578:G563_1A18
12791A_A590:U667_1A120
12951A_A609:G619_1A1011
13031A_A637:G651_1A60
13131A_A675:U803_1A424
13141A_A676:A802_1A45
13151A_A677:A800_1A21
13291A_A689:U773_1A120
13421A_A722:U709_1A120
13471A_A727:G704_1A1011
13531A_A735:A761_1A60
13631A_A746:G748_1A00
13701A_A752:U2609_1A120
13231A_A777:U787_1A120
13751A_A835:U822_1A120
13811A_A841:U937_1A120
13871A_A849:G928_1A100
13991A_A861:G916_1A1011
14011A_A863:U913_1A120
14051A_A870:U907_1A120
14071A_A872:U905_1A120
14281A_A973:A820_1A72
14541A_A1010:C1008_1A00
14901A_A1028:A1126_1A82
14931A_A1032:G1122_1A18
15051A_A1048:G1110_1A00
15061A_A1050:C1109_1A00
15191A_A1054:U1105_1A120
15121A_A1057:U1081_1A120
15111A_A1086:U1082_1A120
14621A_A1142A:U1019_1A221
14581A_A1143:U1012_1A323
14671A_A1148:U1014_1A120
14741A_A1155:U999_1A424
14301A_A1189:G818_1A1011
14351A_A1194:U813_1A120
14451A_A1204:A1241_1A82
15281A_A1213:G1236_1A00
15291A_A1214:G1235_1A611
12601A_A1254:G585_1A1011
12671A_A1262:U2017_1A120
15381A_A1268:G2012_1A1011
15391A_A1269:U2011_1A120
15471A_A1286:U1282_1A424
15661A_A1301:G1626_1A60
15781A_A1317:U1335_1A120
15831A_A1342:U1602_1A424
15911A_A1354:G1377_1A1011
15961A_A1359:U1372_1A221
15971A_A1360:G1371_1A1011
16021A_A1395:U1390_1A424
16171A_A1412:U1590_1A120
16241A_A1419:U1578_1A424
16311A_A1427:A1571_1A82
16571A_A1452:A1457_1A00
16781A_A1486:U1503_1A120
16841A_A1528:A1542_1A82
16851A_A1528A:G1541_1A1011
16461A_A1553:U1438_1A424
16891A_A1554:A1634_1A45
16501A_A1558:A1434_1A21
16531A_A1562:U1431_1A120
16901A_A1608:U1621_1A424
16931A_A1655:A2005_1A100
17021A_A1664:C1996_1A226
17031A_A1665:U1995_1A120
17051A_A1669:U1993_1A120
17231A_A1689:A1698_1A82
17241A_A1690:G1697_1A100
17271A_A1741:G1721_1A60
17371A_A1749:U1709_1A120
17421A_A1773:A1977_1A60
17511A_A1783:G2607_1A110
17601A_A1791:G1828_1A1011
17701A_A1802:A1815_1A82
17711A_A1803:G1814_1A511
17431A_A1829:U1693_1A120
18061A_A1912:PSU1917_1A423
18081A_A1932:G1968_1A1011
12561A_A2019:G2035_1A18
12571A_A2020:U2034_1A120
12501A_A2030:A567_1A00
12371A_A2033:U562_1A120
18391A_A2057:U2611_1A120
18401A_A2062:2MA2503_1A00
19031A_A2114:A2119_1A45
19051A_A2117:U2172_1A00
19071A_A2173:G2125_1A100
19101A_A2176:U2122_1A120
19311A_A2199:G2224_1A1011
18421A_A2227:U2092_1A00
18551A_A2241:U2079_1A120
19421A_A2247:U2257_1A120
13971A_A2268:A918_1A82
19491A_A2273:A2266_1A72
19501A_A2274:U2265_1A00
19531A_A2278:U2262_1A120
19621A_A2287:U2344_1A221
19711A_A2298:G2318_1A100
19791A_A2322:A2335_1A21
19851A_A2361:C2356_1A00
19901A_A2366:G2351_1A911
19931A_A2369:U2348_1A120
110021A_A2392:C2424_1A425
110031A_A2393:A2422_1A45
18581A_A2435:U2074_1A120
18681A_A2450:C2063_1A10
18691A_A2451:G2061_1A18
18711A_A2453:U2500_1A120
18771A_A2459:U2493_1A120
18881A_A2469:G2481_1A911
110611A_A2531:A2662_1A21
18251A_A2566:U2562_1A424
17501A_A2587:G2608_1A1011
17531A_A2589:PSU2605_1A10
17541A_A2590:U2604_1A120
19451A_A2602:A76_1x00
18321A_A2621:U2047_1A120
110591A_A2657:G2664_1A911
110311A_A2711:U2696_1A120
110391A_A2721:U2688_1A60
110431A_A2725:U2684_1A120
110771A_A2734:G2770_1A611
110811A_A2738:G2766_1A18
110831A_A2741:G2763_1A611
110901A_A2748:U2754_1A00
110911A_A2749:A2753_1A45
110921A_A2750:C2752_1A00
110191A_A2765:A2541_1A50
110661A_A2775:A2639_1A100
110681A_A2776:U2637_1A424
110671A_A2778:G2638_1A1011
110991A_A2810:G2891_1A611
111021A_A2813:U2887_1A120
111091A_A2821:A2826_1A50
111231A_A2851:U2866_1A00
191A_C18:G522_1A119
1101A_C19:G521_1A119
1111A_C20:G520_1A119
1131A_C22:G518_1A119
1211A_C31:G474_1A119
1221A_C32:G473_1A119
1271A_C37:G442_1A119
1291A_C39:G440_1A119
1301A_C40:G438_1A119
1311A_C41:G437_1A119
1501A_C45:G179_1A119
1511A_C47:G178_1A119
1531A_C62:G93_1A119
1551A_C65:G89_1A119
1561A_C66:G88_1A119
1591A_C69:G58_1A119
1761A_C76:G110_1A119
1771A_C77:G109_1A119
1861A_C86:G96_1A119
1871A_C87:G95_1A119
1621A_C115:G55_1A119
1631A_C116:G54_1A119
1881A_C128:G123_1A119
1891A_C129:G122_1A119
1901A_C130:G121_1A119
1931A_C133:G146_1A119
1941A_C134:G145_1A119
1971A_C137:G143_1A119
1701A_C151:G175_1A119
1721A_C153:G173_1A119
1741A_C154A:G171_1A10
1361A_C183:G214_1A119
1371A_C184:G212_1A119
1451A_C192:C203_1A60
11071A_C253:G245_1A119
11221A_C267:G425_1A119
11231A_C268:G424_1A119
11261A_C271B:G271V_1A119
11271A_C271C:G271U_1A119
11301A_C271F:G271R_1A10
11311A_C271G:G271Q_1A119
11341A_C271J:G271M_1A00
11651A_C279:G361_1A119
11661A_C280:G360_1A119
11701A_C285:G356_1A119
11711A_C286:G355_1A119
11721A_C287:G354_1A119
11731A_C288:G353_1A119
11761A_C291:G349_1A119
11771A_C292:G348_1A119
11811A_C296:G342_1A119
11821A_C297:G341_1A119
11901A_C302:G315_1A119
11881A_C334:G317_1A119
11411A_C364:G272D_1A119
11421A_C365:G272C_1A119
11431A_C366:G272B_1A119
12141A_C375:G399_1A119
12131A_C376:G398_1A119
12121A_C377:G397_1A119
12111A_C378:G396_1A119
12051A_C385:G411_1A119
11531A_C413:G2410_1A00
11521A_C414:G2409_1A119
11501A_C416:G2407_1A119
11491A_C417:G410_1A119
11471A_C419:G408_1A119
11461A_C420:G407_1A119
12211A_C461:G468_1A119
12221A_C462:G467_1A119
12001A_C509:G481_1A10
12411A_C535:G558_1A119
12431A_C537:G556_1A119
12461A_C540:G553_1A119
12471A_C541:G552_1A119
12481A_C542:G551_1A119
12491A_C543:G549_1A119
12721A_C587:U810_1A30
12781A_C589:G668_1A119
12801A_C591:G666_1A119
12841A_C595:G662_1A119
12901A_C601:G656_1A119
12921A_C605:G623_1A119
12971A_C611:G616_1A119
12981A_C612:G615_1A119
13061A_C640:G648_1A119
13071A_C641:G647_1A119
13101A_C652D:G652U_1A119
12731A_C671:G809_1A119
12741A_C672:G808_1A119
12751A_C673:U807_1A00
13161A_C678:G799_1A119
13171A_C679:G798_1A119
13211A_C683:G794_1A119
13281A_C687:A1780_1A50
13311A_C691:G771_1A119
13321A_C692:G770_1A119
13331A_C693:G769_1A119
13371A_C697:G765_1A119
13381A_C698:G763_1A119
13391A_C719:G712_1A119
13401A_C720:G711_1A119
13411A_C721:G710_1A119
13491A_C730:G702_1A119
13501A_C731:G701_1A119
13511A_C732:G700_1A119
13541A_C736:G760_1A119
13551A_C737:G759_1A119
13741A_C834:G823_1A119
13771A_C837:G942_1A119
13781A_C838:G940_1A119
13801A_C840:G938_1A119
13841A_C844:G934_1A119
13861A_C846:G931_1A119
13881A_C850:G927_1A119
13941A_C856:G921_1A119
13951A_C857:G920_1A119
14111A_C876:A901_1A10
14161A_C884:G892_1A119
14191A_C964:A953_1A10
14201A_C965:G952_1A119
14221A_C967:G950_1A119
14251A_C970:G947_1A119
14261A_C971:G946_1A119
14511A_C976:G987_1A119
14981A_C1038:G1117_1A119
15001A_C1040:G1115_1A00
15011A_C1041:G1114_1A119
15031A_C1043:G1112_1A10
15171A_C1052:G1107_1A119
15181A_C1053:G1106_1A119
15091A_C1064:G1074_1A119
15251A_C1092:G1099_1A119
14601A_C1140:G1024_1A119
14641A_C1145:G1017_1A119
14651A_C1146:G1016_1A119
14661A_C1147:G1015_1A119
14691A_C1150:G1011_1A119
14711A_C1152:G1003_1A119
14721A_C1153:G1002_1A119
14761A_C1158:G997_1A119
14791A_C1161:G993_1A119
14841A_C1166:G1183_1A119
14371A_C1196:G1250_1A119
14411A_C1200:G1245_1A119
14421A_C1201:G1244_1A119
14431A_C1202:G1243_1A119
14471A_C1207:G1239_1A119
14481A_C1208:G1238_1A119
15321A_C1217:G1232_1A119
15331A_C1218:G1231_1A119
15351A_C1221:G1229_1A119
15361A_C1221A:G1228_1A119
15371A_C1222:G1227_1A119
12591A_C1251:A586_1A425
12621A_C1257:G583_1A119
12631A_C1258:G582_1A119
12661A_C1261:G579_1A119
15401A_C1270:G2010_1A119
15481A_C1289:G1281_1A119
15491A_C1290:G1280_1A119
15501A_C1291:G1279_1A119
15521A_C1293:G1277_1A119
15541A_C1295:G1645_1A119
15561A_C1297:G1643_1A119
15571A_C1298:G1642_1A119
15681A_C1304:G1624_1A119
15691A_C1305:G1623_1A119
15701A_C1306:G1622_1A119
15751A_C1314:G1338_1A119
15761A_C1315:G1337_1A119
15791A_C1318:G1334_1A119
15841A_C1345:G1601_1A119
15881A_C1350:G1381_1A119
15891A_C1351:G1380_1A119
15991A_C1362:G1369_1A119
16001A_C1363:G1368_1A119
16031A_C1398:G1389_1A119
16041A_C1399:G1388_1A119
16071A_C1402:G1385_1A119
16081A_C1403:G1344_1A119
16091A_C1404:G1343_1A119
16121A_C1407:G1595_1A119
16131A_C1408:G1594_1A119
16141A_C1409:G1593_1A119
16161A_C1411:G1591_1A119
16221A_C1417:G1581_1A119
16321A_C1428:A1570_1A00
16351A_C1462:G1450_1A10
16361A_C1463:G1448_1A119
16371A_C1464:G1447_1A119
16611A_C1511:G1480_1A119
16631A_C1513:G1478_1A119
16661A_C1516:G1475_1A119
16871A_C1530:G1539_1A119
16881A_C1531:G1538_1A119
16401A_C1547:G1444_1A119
16411A_C1548:G1443_1A119
16421A_C1549:G1442_1A119
16431A_C1550:G1441_1A119
16441A_C1551:G1440_1A119
16481A_C1556:G1436_1A119
16491A_C1557:G1435_1A119
16551A_C1564:G1429_1A119
16561A_C1565:G1568_1A119
16911A_C1611:G1620_1A119
16921A_C1612:G1619_1A119
15631A_C1631:G1635_1A119
15411A_C1648:G2009_1A119
16941A_C1656:G2004_1A119
16951A_C1657:G2003_1A119
16961A_C1658:G2002_1A119
16981A_C1660:G2000_1A119
17001A_C1662:G1998_1A119
17011A_C1663:G1997_1A119
17181A_C1683:G1705_1A119
17191A_C1684:G1704_1A119
17201A_C1685:G1703_1A119
17211A_C1686:G1702_1A119
17251A_C1691:G1696_1A119
17291A_C1743:G1719_1A119
17301A_C1744:G1718_1A119
17311A_C1745:G1717_1A119
17321A_C1745A:G1714_1A119
17391A_C1751:G1707_1A119
17401A_C1752:G1756_1A119
17091A_C1765:G1987_1A119
17111A_C1767:G1985_1A119
17151A_C1771:G1980_1A119
13641A_C1774:G729_1A119
17621A_C1793:G1826_1A119
17641A_C1795:G1824_1A119
17661A_C1797:G1822_1A119
17691A_C1800:G1817_1A222
17721A_C1804:G1813_1A119
17741A_C1806:G1811_1A119
17441A_C1830:G1975_1A119
17461A_C1832:G1973_1A119
17771A_C1836:G1904_1A119
17781A_C1837:G1903_1A119
17821A_C1843:G1897_1A119
17831A_C1844:G1896_1A119
17891A_C1852:A1890_1A00
18041A_C1924:G1906_1A119
18051A_C1925:G1929_1A222
18101A_C1934:G1964_1A119
18151A_C1947:G1959_1A119
12341A_C2025:G2038_1A119
12351A_C2026:G2037_1A119
18721A_C2055:C2499_1A00
19011A_C2111:G2147_1A00
19381A_C2128:G2160_1A119
19391A_C2129:G2159_1A119
18931A_C2136:G2155_1A119
18941A_C2137:G2154_1A119
18951A_C2138:G2153_1A119
18961A_C2139:G2152_1A119
18971A_C2140:G2151_1A119
18991A_C2142:G2149_1A119
19001A_C2143:G2148_1A119
19061A_C2164:G2116_1A00
19081A_C2174:G2124_1A119
19091A_C2175:G2123_1A119
19111A_C2177:G2121_1A119
19121A_C2178:G2120_1A119
19131A_C2179:G2110_1A119
19161A_C2183:G2106_1A119
19181A_C2185:G2104_1A119
19211A_C2188:G2101_1A119
19281A_C2195:G2094_1A119
19291A_C2196:G2093_1A119
19321A_C2200:G2223_1A119
19331A_C2201:G2222_1A119
19341A_C2202:G2221_1A119
19361A_C2205:G2219_1A119
18441A_C2229:G2090_1A119
18461A_C2231:G2088_1A119
18511A_C2236:G2083_1A119
18541A_C2240:G2080_1A119
19431A_C2248:G2256_1A119
19441A_C2275:G2255_1A119
19561A_C2281:G2259_1A119
19661A_C2292:G2340_1A119
19671A_C2293:G2339_1A119
19681A_C2294:G2338_1A119
19691A_C2295:G2337_1A119
19701A_C2297:G2321_1A10
19741A_C2301:G2315_1A119
19811A_C2324:G2331_1A119
19611A_C2326:G2389_1A119
110001A_C2359:G2428_1A119
19871A_C2363:G2354_1A119
19881A_C2364:G2353_1A119
19921A_C2368:G2349_1A119
19981A_C2374:G2379_1A119
19821A_C2385:G2330_1A119
19831A_C2386:G2329_1A119
11641A_C2395:G2421_1A119
11571A_C2403:G2414_1A119
11561A_C2404:G2413_1A119
18621A_C2441:G2070_1A119
18631A_C2442:G2069_1A119
18641A_C2443:G2067_1A119
18701A_C2452:U2504_1A118
18751A_C2456:G2495_1A119
18801A_C2461:G2489_1A119
18821A_C2463:G2487_1A119
18831A_C2464:G2486_1A119
18841A_C2465:G2485_1A119
18851A_C2466:G2484_1A119
18861A_C2467:C2483_1A10
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134882a_G1497:5MC1404_2a119
134922a_G1504:C1399_2a119
134932a_G1505:A1502_2a30
134952a_G1508:C1527_2a119
134982a_G1511:C1524_2a119
135032a_G1516:MA61519_2a00
131132a_PSU516:A533_2a423
129272a_U13:A915_2a323
129302a_U17:A918_2a120
129232a_U24:A10_2a120
129522a_U30:A553_2a120
129582a_U37:A397_2a221
129592a_U49:U365_2a40
129702a_U62:G105_2a128
130012a_U114:A313_2a120
130172a_U125:G236_2a128
130212a_U129:G232_2a128
130242a_U133:U229_2a116
130292a_U189K:G189_2a128
130312a_U190:C187_2a00
130332a_U192:A185_2a120
130662a_U249:G275_2a128
130672a_U252:A274_2a120
130682a_U253:A273_2a120
130712a_U256:A270_2a120
130772a_U294:A303_2a120
130792a_U296:G301_2a128
129952a_U340:A349_2a120
129622a_U358:A53_2a120
129612a_U359:G52_2a128
130862a_U387:G376_2a128
131012a_U404:U498_2a30
131412a_U420:G423_2a00
131222a_U434:A408_2a120
131252a_U437:A495_2a424
131682a_U571:A865_2a120
131852a_U636:A602_2a120
131932a_U646:G593_2a128
132052a_U659:A746_2a120
132142a_U669:A737_2a120
132172a_U672:G734_2a128
132222a_U677:G713_2a10
132232a_U678:A712_2a120
132302a_U686:A704_2a424
131722a_U757:G584_2a128
132542a_U772:A807_2a120
132662a_U788:A794_2a00
131662a_U820:A873_2a00
131652a_U827:A872_2a221
132712a_U831:G855_2a128
132732a_U833:G853_2a128
132752a_U835:G851_2a128
132862a_U891:A907_2a424
132982a_U943:A1340_2a120
133002a_U960:U956_2a213
133132a_U961:A1201_2a00
133552a_U997:A1044_2a120
133582a_U1000:A1041_2a120
133702a_U1012:G1017_2a128
133772a_U1070:A1105_2a120
133802a_U1073:A1102_2a120
133852a_U1086:G1099_2a10
133892a_U1090:U1095_2a116
133992a_U1121:A1152_2a120
134002a_U1122:A1151_2a120
134102a_U1135:G1138_2a60
133512a_U1194:U1062_2a116
133472a_U1199:G1058_2a128
133072a_U1232:A949_2a120
133102a_U1235:A946_2a120
134262a_U1247:G1290_2a128
133202a_U1307:U1330_2a116
133212a_U1308:A1329_2a120
133262a_U1313:A1324_2a120
133282a_U1315:A1319_2a424
134382a_U1345:U1376_2a213
134422a_U1351:G1371_2a128
134492a_U1358:A1363A_2a221
129452a_U1380:A935_2a120
129382a_U1390:G927_2a128
129372a_U1391:G925_2a128
129352a_U1393:A923_2a120
134652a_U1472:A1428_2a120
134742a_U1481:G1419_2a128
134782a_U1485:G1415_2a128
134862a_U1495:U1406_2a00
134972a_U1510:G1525_2a128
134992a_U1512:G1523_2a128

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)