A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
Search for released structures

NDB ID: 6XQE  PDB ID: 6XQE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18001A_4OC1920:G1910_1A-0.7730.856-0.292-17.28116.66811.624
18111A_5MC1942:U1940_1A-6.1180.714-1.02616.376-10.24133.372
111A_A6:U2897_1A0.250.344-0.15852.8644.575-21.922
131A_A8:U2895_1A1.03-0.0350.341-4.483-15.7967.443
1121A_A21:U519_1A0.760.1910.448-8.388-8.203-3.541
1181A_A28:G512_1A-6.37-4.0571.926-19.301-2.42515.282
1281A_A38:U441_1A-0.288-0.1140.998-6.477-5.27111.356
1331A_A43:U434_1A-0.452-0.0760.498-25.3743.382-1.842
1671A_A49:U120_1A-0.325-3.1891.679-19.1258.21162.206
1541A_A64:U90_1A3.6092.799-0.965-13.796-9.187-111.14
1781A_A78:U108_1A-0.0070.4520.6085.1012.1968.57
1841A_A84:G102_1A-6.349-3.997-0.555-13.32743.8763.505
1661A_A118:G51_1A-6.607-4.6390.485-21.61933.24610.015
1651A_A119:A52_1A-5.7665.547-0.248-33.24-1.439-168.847
1431A_A190:U206_1A-4.111-1.698-1.068-1.418-12.02-109.831
1441A_A191:A204_1A6.144-5.248-0.27413.359.585179.291
1991A_A199:U2431_1A-4.9540.559-1.903-7.282-13.41822.265
11001A_A216:U431_1A-4.151-2.342-2.012-14.509-29.269-91.515
11201A_A221:U427_1A-4.459-2.353-0.63736.675-10.019-76.038
11011A_A222:G232_1A-7.13-4.9041.185-30.61-14.4074.954
11031A_A225:U230_1A0.35-0.556-0.101-0.934-12.609-3.947
11181A_A233:A429_1A1.9071.544-0.633-10.8571.05-174.592
11051A_A251:G247_1A-6.736-4.8840.893-17.0089.2-11.786
11091A_A255:U243_1A-4.157-1.242-1.53-1.866-25.919-106.169
11101A_A256:A241_1A5.607-5.117-0.5216.407-0.154170.048
11111A_A257:G240_1A-6.455-4.034-0.7681.785-5.628-6.032
11161A_A262:U235_1A1.286-0.034-0.349-9.902-13.0273.485
11251A_A270:U271Y_1A-4.1-1.86-0.155-18.85-6.663-93.951
11681A_A282:U358_1A-4.064-2.8071.3465.99115.241-94.619
11741A_A289:G351_1A-6.998-4.723-0.2526.37-5.444-1.138
11791A_A294:G344_1A-7.423-5.16-0.30919.258-17.367-31.26
11851A_A299:G338_1A-1.4293.742-0.854-19.172-5.581-115.708
11841A_A322:U339_1A3.1590.562-1.491-19.27118.89787.674
11361A_A363A:U272I_1A-1.2460.021-0.927-17.053-7.751-4.387
12151A_A374:G400_1A-7.004-4.0660.348-2.999-2.042-2.296
12161A_A401:U373_1A-3.687-1.624-1.215-8.319-11.559-98.267
12171A_A402:A423_1A-1.853-1.594-0.55545.982-11.397163.567
11541A_A412:A2411_1A-6.12-3.7560.2867.637-10.888-16.383
11511A_A415:U2408_1A0.482-0.02-0.37-3.976-13.482-9.315
1241A_A454:G446_1A-2.9413.8120.502-25.62-3.62982.839
12181A_A457:A471_1A6.266-5.292-0.84430.6212.411175.945
12201A_A460:G469_1A-6.789-3.922-0.718-7.927-3.814-3.324
12241A_A492:G488_1A-7.113-5.3181.14-24.5291.193-3.756
12291A_A497:A482_1A-5.432-0.119-1.005-14.662-22.85652.777
11971A_A501:A477_1A6.205-5.079-0.72432.743-27.342176.597
11991A_A503:A479_1A-1.89-0.7240.201-23.405-6.796168.286
11981A_A505:A480_1A-1.683-0.6080.059-7.9415.355174.366
12311A_A529:U2041_1A-4.095-1.895-0.2958.936-12.593-81.245
12421A_A536:U557_1A0.122-0.0990.5211.186-0.193-5.5
12511A_A575:U566_1A0.524-0.5050.41816.184-22.376-3.544
12541A_A578:G563_1A-0.0431.7390.20511.753-3.169-7.256
12791A_A590:U667_1A0.046-0.3350.25811.068-8.9522.129
12951A_A609:G619_1A-6.988-4.5841.1179.705-15.372-8.816
13031A_A637:G651_1A2.7187.583-0.92143.484-7.665151.1
13131A_A675:U803_1A-4.238-2.45-1.3372.418-19.72-100.262
13141A_A676:A802_1A-4.0171.305-1.00818.491-38.215-106.668
13151A_A677:A800_1A-1.439-1.629-0.29918.5084.029164.94
13291A_A689:U773_1A-0.3150.1560.40613.775-3.188-4.772
13421A_A722:U709_1A0.103-0.3750.057-8.02-7.684-5.986
13471A_A727:G704_1A-6.635-4.9241.476-19.813-1.97.856
13531A_A735:A761_1A-6.945-4.869-0.4790.389-10.781-17.21
13631A_A746:G748_1A3.5545.9582.307-20.71415.32156.736
13701A_A752:U2609_1A-0.3070.028-0.832-27.20315.3-4.975
13231A_A777:U787_1A-0.573-0.099-0.904-19.193-0.423-2.556
13751A_A835:U822_1A0.956-0.380.1415.322-2.375-9.191
13811A_A841:U937_1A1.160.143-0.167-4.745-8.4386.31
13871A_A849:G928_1A-7.058-5.223-0.575-0.61-8.103-10.771
13991A_A861:G916_1A-6.723-3.919-0.542-10.447-4.033-0.436
14011A_A863:U913_1A-0.79-0.0060.29718.1398.37-0.508
14051A_A870:U907_1A0.006-0.317-0.4412.724-15.3691.829
14071A_A872:U905_1A1.044-0.184-1.086-11.971-14.9397.022
14281A_A973:A820_1A-5.1295.3350.084-15.09913.87-166.798
14541A_A1010:C1008_1A-5.5932.524-0.07443.786-36.73244.872
14901A_A1028:A1126_1A-6.1975.181-0.87-28.332.435-176.915
14931A_A1032:G1122_1A-1.2591.593-0.09-12.3451.322-10.439
15051A_A1048:G1110_1A-7.513-4.080.587-21.744-4.446-41.898
15061A_A1050:C1109_1A-7.012-2.581.8385.5619.612.95
15191A_A1054:U1105_1A-1.055-0.6970.5870.331-34.469-19.394
15121A_A1057:U1081_1A-0.397-0.26-0.03811.929-42.716-8.853
15111A_A1086:U1082_1A0.981-1.0720.20313.439-18.893167.62
14621A_A1142A:U1019_1A0.0941.244-0.24119.234-5.994163.227
14581A_A1143:U1012_1A0.395-3.689-1.41825.686-26.0265.343
14671A_A1148:U1014_1A-0.261-0.2230.191-12.376-10.6473.359
14741A_A1155:U999_1A-3.796-1.983-0.728-5.727-9.91-96.393
14301A_A1189:G818_1A-7.227-4.432-0.02-9.5421.211-10.407
14351A_A1194:U813_1A-0.314-0.07-0.868-16.006-12.8191.377
14451A_A1204:A1241_1A-5.6295.183-0.72-30.797-8.563-178.027
15281A_A1213:G1236_1A-6.842-5.4050.799-29.2585.993-10.827
15291A_A1214:G1235_1A-6.891-4.498-0.0357.982-5.4-1.433
12601A_A1254:G585_1A-6.783-4.3730.1578.202-14.807-2.061
12671A_A1262:U2017_1A0.010.005-0.079-0.859-12.925.667
15381A_A1268:G2012_1A-7.011-4.211-1.054-2.818-1.868-8.403
15391A_A1269:U2011_1A0.054-0.216-0.2315.111-19.934-1.639
15471A_A1286:U1282_1A-4.066-2.2180.395-1.118.916-89.552
15661A_A1301:G1626_1A1.4256.8610.959-7.2298.64127.658
15781A_A1317:U1335_1A-0.379-0.099-0.44811.742-6.8625.272
15831A_A1342:U1602_1A-3.822-2.116-0.592-15.9126.52-92.182
15911A_A1354:G1377_1A-6.888-4.1050.83218.707-32.516-3.451
15961A_A1359:U1372_1A0.5560.208-0.0092.082-0.47175.134
15971A_A1360:G1371_1A-6.574-4.404-0.2626.872-13.011-13.798
16021A_A1395:U1390_1A-4.118-2.182-0.3277.329-5.482-94.803
16171A_A1412:U1590_1A0.966-0.107-0.38-18.818-16.028-2.139
16241A_A1419:U1578_1A-3.539-2.094-0.61515.64-14.629-94.928
16311A_A1427:A1571_1A-5.9395.315-0.249-6.828-1.367-168.948
16571A_A1452:A1457_1A-5.4442.9930.922.062-8.147-160.483
16781A_A1486:U1503_1A0.023-0.519-0.803-29.754-22.618-2.643
16841A_A1528:A1542_1A5.334-4.8831.06815.6946.759170.368
16851A_A1528A:G1541_1A-6.475-4.158-0.4329.54-46.7783.158
16461A_A1553:U1438_1A-4.594-2.8520.6931.574-1.033-98.57
16891A_A1554:A1634_1A4.161.3070.54611.495-4.987-107.343
16501A_A1558:A1434_1A1.21.9690.233-24.54218.762-174.345
16531A_A1562:U1431_1A0.2610.075-0.214-10.872-21.6115.255
16901A_A1608:U1621_1A-4.229-1.585-0.578.4755.082-102.037
16931A_A1655:A2005_1A-6.231-4.1850.4220.963-3.515-12.361
17021A_A1664:C1996_1A-0.571-0.99-0.58824.834-13.268167.799
17031A_A1665:U1995_1A0.5370.189-0.119-1.071-12.982-3.618
17051A_A1669:U1993_1A-0.411-0.2880.207-6.9728.2234.869
17231A_A1689:A1698_1A6.023-5.142-1.1322.364-9.411176.7
17241A_A1690:G1697_1A-7.264-4.7090.7786.714-12.43-12.602
17271A_A1741:G1721_1A-7.227-4.3840.29-15.4753.1212.546
17371A_A1749:U1709_1A0.5640.187-0.772-26.142-8.87-0.103
17421A_A1773:A1977_1A2.896-3.672-0.06911.25718.505-81.421
17511A_A1783:G2607_1A2.3667.7260.43412.332-12.927160.768
17601A_A1791:G1828_1A-6.699-4.345-0.59632.454-31.641-0.748
17701A_A1802:A1815_1A5.989-5.1610.421.0028.345169.799
17711A_A1803:G1814_1A-6.651-4.0780.47515.463-22.3886.653
17431A_A1829:U1693_1A0.474-0.3760.14922.616-6.276-5.253
18061A_A1912:PSU1917_1A-3.125-0.568-0.2587.198-16.9-102.096
18081A_A1932:G1968_1A-6.685-4.3360.068-0.184-2.708-10.97
12561A_A2019:G2035_1A0.0131.4250.811-15.27-2.874-20.377
12571A_A2020:U2034_1A0.55-0.1061.26723.494-11.062.161
12501A_A2030:A567_1A-2.4781.921-1.6214.623-8.127-6.907
12371A_A2033:U562_1A0.4190.0330.49213.35716.232-7.445
18391A_A2057:U2611_1A0.136-0.2791.156-8.87120.2714.705
18401A_A2062:2MA2503_1A-3.2744.9842.273-48.62440.883-171.515
19031A_A2114:A2119_1A2.7473.4420.90918.4234.141-130.184
19051A_A2117:U2172_1A-1.7350.139-0.635-8.504-39.44518.203
19071A_A2173:G2125_1A-7.276-5.660.9580.894-4.982-16.962
19101A_A2176:U2122_1A0.932-0.086-0.055-2.538-25.246-5.987
19311A_A2199:G2224_1A-7.014-3.880.27.713.106-1.099
18421A_A2227:U2092_1A3.902-6.710.27116.3871.028173.701
18551A_A2241:U2079_1A-0.2850.012-0.36-20.894-27.5694.582
19421A_A2247:U2257_1A-0.369-0.118-0.0332.94-20.04-0.416
13971A_A2268:A918_1A5.805-5.208-0.374-3.485-18.548178.612
19491A_A2273:A2266_1A6.121-5.604-0.60225.978-33.332175.222
19501A_A2274:U2265_1A-6.403-1.845-0.426-12.913-1.546-9.52
19531A_A2278:U2262_1A0.016-0.118-0.58-16.443-2.159-1.029
19621A_A2287:U2344_1A0.3110.1260.13311.753-4.967163.821
19711A_A2298:G2318_1A-7.2-4.814-0.569-3.01310.081-15.446
19791A_A2322:A2335_1A-1.282-0.6250.506-23.459-7.218176.08
19851A_A2361:C2356_1A-4.972-1.379-1.859-17.805-2.98-1.185
19901A_A2366:G2351_1A-6.697-3.9820.9124.569-2.8842.64
19931A_A2369:U2348_1A0.129-0.1390.22-1.413-2.616.487
110021A_A2392:C2424_1A-3.367-0.973-0.451-18.9585.657-84.552
110031A_A2393:A2422_1A-3.7731.553-0.418-9.0113.601-99.689
18581A_A2435:U2074_1A-0.071-0.1320.9190.249-8.425.553
18681A_A2450:C2063_1A-2.1160.098-0.227-36.892-27.02523.475
18691A_A2451:G2061_1A0.0971.524-0.979-39.30634.083-36.043
18711A_A2453:U2500_1A-0.004-0.607-0.275-5.7244.597-6.64
18771A_A2459:U2493_1A0.5330.560.34624.863-14.954-0.381
18881A_A2469:G2481_1A-6.426-3.8940.563-31.7386.7818.421
110611A_A2531:A2662_1A1.5281.855-0.7814.0421.672-167.067
18251A_A2566:U2562_1A3.765-1.6081.653-5.023-16.20993.468
17501A_A2587:G2608_1A-6.902-4.6980.2712.97812.121-13.604
17531A_A2589:PSU2605_1A-0.0160.658-0.0090.069-19.98423.832
17541A_A2590:U2604_1A0.1840.152-0.0626.556-6.8698.284
19451A_A2602:A76_1x-2.3976.0381.507-33.45721.967-100.216
18321A_A2621:U2047_1A-0.766-0.3041.0066.108-9.8613.402
110591A_A2657:G2664_1A-6.994-3.525-0.04-1.774.279-4.64
110311A_A2711:U2696_1A-0.7960.0050.60418.741-22.090.103
110391A_A2721:U2688_1A-7.34-4.7670.345-3.735-9.2741.86
110431A_A2725:U2684_1A0.191-0.2910.46313.201-21.873-1.972
110771A_A2734:G2770_1A-6.734-4.3990.3379.244-14.1172.323
110811A_A2738:G2766_1A0.5861.682-0.368-20.522-4.723-16.445
110831A_A2741:G2763_1A-6.943-4.3310.098.492-17.226-0.382
110901A_A2748:U2754_1A-4.409-1.39-0.1053.897-0.275-115.084
110911A_A2749:A2753_1A-4.5371.402-0.29316.907-13.61-110.426
110921A_A2750:C2752_1A4.712-2.0941.047-39.4497.293-45.122
110191A_A2765:A2541_1A-6.278-0.296-0.1185.144-7.9551.146
110661A_A2775:A2639_1A6.793-4.547-0.29511.177-11.398-20.768
110681A_A2776:U2637_1A-3.793-2.2510.8876.98518.502-93.699
110671A_A2778:G2638_1A-7.176-4.4740.802-20.03719.581-0.621
110991A_A2810:G2891_1A-7.073-4.0190.54219.127-34.367-0.575
111021A_A2813:U2887_1A0.0060.1830.203-10.585-2.7516.545
111091A_A2821:A2826_1A6.248-0.068-0.198-14.0496.79152.37
111231A_A2851:U2866_1A3.714-5.7710.35428.764-23.03172.687
191A_C18:G522_1A0.0760.1880.215-4.07811.7626.302
1101A_C19:G521_1A-1.568-0.04-1.29712.661-15.408-5.609
1111A_C20:G520_1A-0.107-0.168-0.174-11.018-4.794-0.784
1131A_C22:G518_1A0.0210.078-0.34710.205-6.7552.221
1211A_C31:G474_1A-0.7890.2130.151-10.082-15.3886.037
1221A_C32:G473_1A-0.013-0.2070.042-8.151-17.8384.674
1271A_C37:G442_1A-0.4060.1230.073-10.763-6.0947.728
1291A_C39:G440_1A-0.195-0.3110.525-0.282-14.642.572
1301A_C40:G438_1A0.0360.0120.2085.637-8.443-0.143
1311A_C41:G437_1A-0.6590.029-0.547.576-6.38-1.183
1501A_C45:G179_1A0.413-0.262-0.1044.6251.873.091
1511A_C47:G178_1A0.18-0.296-0.94612.724-0.818-5.127
1531A_C62:G93_1A-0.007-0.0140.196-11.7360.051-2.658
1551A_C65:G89_1A-0.5650.397-0.0886.675-9.8129.39
1561A_C66:G88_1A0.029-0.164-0.2164.151.7284.692
1591A_C69:G58_1A0.723-0.4780.713-0.128-26.843-1.974
1761A_C76:G110_1A-0.504-0.293-0.57612.737-4.0411.475
1771A_C77:G109_1A-0.1590.118-0.3630.755-7.487-7.241
1861A_C86:G96_1A0.293-0.2660.19-3.6991.2424.1
1871A_C87:G95_1A0.3640.17-0.49219.7562.5315.078
1621A_C115:G55_1A0.5490.122-0.5557.232-9.7912.029
1631A_C116:G54_1A0.354-0.118-0.3441.123-9.9273.236
1881A_C128:G123_1A0.193-0.3470.0279.166-15.2550.735
1891A_C129:G122_1A0.363-0.2240.3053.338-8.8120.655
1901A_C130:G121_1A0.944-0.5890.671-6.64-1.276-7.07
1931A_C133:G146_1A-0.331-0.1330.124.014-15.676-3.796
1941A_C134:G145_1A0.032-0.406-0.2157.821-9.216-4.991
1971A_C137:G143_1A0.317-0.040.511-12.299-6.741-2.425
1701A_C151:G175_1A0.693-0.0120.18114.551-18.2619.788
1721A_C153:G173_1A1.1610.1-0.6776.608-11.984-1.898
1741A_C154A:G171_1A0.029-0.2460.834-10.8843.379-14.528
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130772a_U294:A303_2a-0.2440.077-1.0069.889-12.563-2.488
130792a_U296:G301_2a3.428-0.7210.2-4.3448.889-1.757
129952a_U340:A349_2a-0.1370.122-0.1986.576-4.6134.135
129622a_U358:A53_2a-0.146-0.175-0.28113.93-12.7795.708
129612a_U359:G52_2a1.313-0.4350.2166.3686.3077.274
130862a_U387:G376_2a0.5180.0150.264-1.185-4.5298.121
131012a_U404:U498_2a0.3652.4390.07-1.414-18.82-83.718
131412a_U420:G423_2a1.957-5.893-0.429-16.345.387-83.272
131222a_U434:A408_2a-0.817-0.264-0.5864.161.9742.975
131252a_U437:A495_2a4.068-1.245-1.071-8.958-4.07-106.382
131682a_U571:A865_2a-0.381-0.2850.795-14.478-14.61-2.375
131852a_U636:A602_2a-0.1440.265-0.465.712-11.00511.236
131932a_U646:G593_2a0.811-0.347-1.02315.543-17.307-3.251
132052a_U659:A746_2a-0.675-0.5110.0783.052-28.307-7.393
132142a_U669:A737_2a1.2580.1710.26-12.7265.2687.502
132172a_U672:G734_2a2.876-0.768-0.646-10.703-7.2220.456
132222a_U677:G713_2a-2.40.279-0.6466.231-17.588-6.933
132232a_U678:A712_2a0.0520.573-0.08421.479-16.789-10.527
132302a_U686:A704_2a4.425-2.803-0.3112.187-2.825-82.592
131722a_U757:G584_2a1.969-0.783-0.3410.534-5.874-9.666
132542a_U772:A807_2a0.086-0.1140.34-13.665.940.6
132662a_U788:A794_2a5.904-1.845-0.126-43.46911.397-47.829
131662a_U820:A873_2a0.1963.811-0.633-25.9-10.142-45.314
131652a_U827:A872_2a0.0-0.0240.538-13.79810.139-158.626
132712a_U831:G855_2a1.32-0.452-0.2041.611-5.054-11.04
132732a_U833:G853_2a1.208-0.304-0.6256.1-17.283-8.948
132752a_U835:G851_2a1.787-0.6341.326-5.7166.657-4.931
132862a_U891:A907_2a4.083-1.025-0.52111.966-21.464-115.968
132982a_U943:A1340_2a-0.7-0.094-0.4888.2460.902-2.876
133002a_U960:U956_2a2.2993.4250.2559.02511.823174.435
133132a_U961:A1201_2a1.228-0.9660.3360.495-24.082-143.372
133552a_U997:A1044_2a1.287-0.9841.13815.934-4.99-1.445
133582a_U1000:A1041_2a-0.2260.018-0.69928.55-30.382-1.369
133702a_U1012:G1017_2a1.363-0.632-1.25313.985-4.207-0.093
133772a_U1070:A1105_2a0.092-0.0680.067-5.519-5.202-0.303
133802a_U1073:A1102_2a0.385-0.219-0.93315.223-30.8080.908
133852a_U1086:G1099_2a-1.936-0.177-1.59639.299-2.704-19.393
133892a_U1090:U1095_2a2.358-1.8240.43119.212-9.67817.106
133992a_U1121:A1152_2a0.095-0.1880.774-5.619-12.173-2.917
134002a_U1122:A1151_2a0.363-0.1590.886-16.333-4.9910.193
134102a_U1135:G1138_2a0.767-6.141-0.772-9.866-0.642-119.072
133512a_U1194:U1062_2a-3.364-1.5550.555-14.6054.81112.045
133472a_U1199:G1058_2a1.982-0.562-1.17917.8622.379-6.081
133072a_U1232:A949_2a0.507-0.2650.682-5.815-10.344-3.237
133102a_U1235:A946_2a-0.229-0.1240.879-14.339-21.06-13.03
134262a_U1247:G1290_2a3.189-0.7850.231.977-35.2592.735
133202a_U1307:U1330_2a-1.391-1.497-0.341-22.101-20.64212.844
133212a_U1308:A1329_2a-0.559-0.063-0.404-2.380.252-0.001
133262a_U1313:A1324_2a-0.465-0.1110.668-7.026-21.252-8.855
133282a_U1315:A1319_2a3.975-1.780.4614.3092.733-95.879
134382a_U1345:U1376_2a-2.6383.8130.826-12.428-12.827-178.388
134422a_U1351:G1371_2a1.425-0.4950.0697.0-18.378-3.354
134492a_U1358:A1363A_2a0.217-1.1830.873-9.6329.635-160.514
129452a_U1380:A935_2a-0.243-0.131-0.98614.3195.045-2.926
129382a_U1390:G927_2a1.511-0.423-0.499-0.888-1.1162.136
129372a_U1391:G925_2a2.112-0.4370.141-9.3-15.536-3.49
129352a_U1393:A923_2a-0.113-0.0690.206-6.944-10.694-4.29
134652a_U1472:A1428_2a-1.0980.1380.707-3.118-0.6329.553
134742a_U1481:G1419_2a2.72-1.0620.048-3.551-13.7970.686
134782a_U1485:G1415_2a2.122-0.4740.57-3.955-9.817-1.533
134862a_U1495:U1406_2a2.342-1.357-0.545-7.384-12.973-24.011
134972a_U1510:G1525_2a1.06-0.427-0.163-3.666-35.163-4.451
134992a_U1512:G1523_2a1.876-0.7080.279-0.012-12.884-0.094

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.