6XT7: Base Pair Morphology Parameters

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As of 3-Mar-2021 number of released structures: 11234

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NDB ID: 6XT7 PDB ID: 6XT7

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_DG1001:DG1019_A	-1.731	-3.37	0.228	-10.626	12.512	89.557
1	5	A_DG1006:DG1024_A	1.526	-3.411	0.049	0.77	1.771	-89.038
1	3	A_DG1010:DG1018_A	1.563	3.383	-0.133	2.333	5.961	-89.605
1	4	A_DG1016:DG1025_A	-1.657	3.402	-0.058	-6.721	-17.15	91.659
1	1	A_DT1003:DT1021_A	2.492	-1.674	0.012	31.058	-6.886	8.402
1	7	B_DG1001:DG1019_B	-1.777	-3.357	0.25	-13.596	12.778	88.323
1	8	B_DG1010:DG1018_B	1.68	3.318	0.231	1.865	6.177	-88.558
1	6	B_DT1003:DT1021_B	2.476	-1.72	0.138	32.225	-6.212	8.302
1	10	C_DG1001:DG1019_C	-1.751	-3.372	0.386	-9.839	11.955	90.356
1	13	C_DG1006:DG1024_C	1.543	-3.304	-0.03	0.828	-0.589	-88.888
1	11	C_DG1010:DG1018_C	1.589	3.468	-0.202	4.342	5.297	-89.123
1	12	C_DG1016:DG1025_C	-1.509	3.474	0.001	-7.248	-20.112	92.442
1	9	C_DT1003:DT1021_C	2.436	-1.725	0.156	28.86	-7.274	8.293
1	18	D_DG1006:DG1024_D	-1.509	-3.526	-0.014	-1.282	-1.8	88.417
1	16	D_DG1010:DG1018_D	1.534	3.446	-0.162	2.996	4.853	-90.566
1	17	D_DG1011:DG1017_D	1.531	3.62	-0.306	3.252	-5.454	-88.417
1	15	D_DG1019:DG1022_D	-1.655	-3.458	-0.097	6.224	9.486	90.661
1	19	D_DG1023:DG1005_D	1.549	3.456	-0.233	-1.176	-11.96	-88.828
1	14	D_DT1003:DT1021_D	2.462	-1.698	0.222	29.736	-8.237	7.718

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.