A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-May-2020 number of released structures: 10752
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NDB ID: 6Y42  PDB ID: 6Y42 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11E_DA2:DT38_F0.252-0.2050.93513.7394.4310.951
13E_DA4:DT36_F0.224-0.1040.58613.423-15.835-4.257
15E_DA6:DT34_F0.263-0.093-0.2160.519-5.0090.746
16E_DA7:DT33_F0.217-0.049-0.215-2.659-14.037-3.823
18E_DA9:DT31_F0.105-0.113-0.366-0.3142.421-0.953
114E_DA15:DT25_F0.555-0.132-0.4873.184-0.147-3.231
116E_DA17:DT23_F0.527-0.0970.479-0.944.106-2.963
128E_DA29:DT11_F-0.015-0.0990.0162.744-6.801-3.832
132E_DA33:DT7_F0.2880.012-0.169-1.985-13.675-6.303
133E_DA34:DT6_F0.303-0.021-0.21-7.952-22.093-6.709
134E_DA35:DT5_F-0.451-0.186-0.357-12.51-10.5260.888
19E_DC10:DG30_F-0.038-0.063-0.3863.7725.018-1.831
111E_DC12:DG28_F-0.229-0.121-0.6334.9536.065-2.657
119E_DC20:DG20_F0.071-0.128-0.539-2.045-1.137-1.103
125E_DC26:DG14_F-0.188-0.0330.015-12.332-3.817-2.332
126E_DC27:DG13_F0.161-0.127-0.384.4247.47-3.342
131E_DC32:DG8_F0.087-0.068-0.0477.361-1.989-2.07
12E_DG3:DC37_F0.121-0.0150.56120.359-0.831-1.87
112E_DG13:DC27_F-0.376-0.13-0.302-9.202-3.112-1.037
113E_DG14:DC26_F0.078-0.049-0.02910.222-2.292-2.255
117E_DG18:DC22_F0.141-0.062-0.01-0.31-3.528-1.765
121E_DG22:DC18_F0.211-0.0980.7676.76-0.218-1.054
123E_DG24:DC16_F-0.246-0.0820.06710.082-2.147-1.894
127E_DG28:DC12_F-0.096-0.131-0.621-7.2174.927-3.999
129E_DG30:DC10_F-0.046-0.046-0.164-8.179-5.6-1.19
136E_DG37:DC3_F-0.331-0.178-0.13211.83121.386-2.155
14E_DT5:DA35_F-0.181-0.111-0.2442.623-8.999-0.315
17E_DT8:DA32_F0.019-0.09-0.186-10.611-5.148-1.587
110E_DT11:DA29_F0.19-0.201-0.4040.7051.4560.585
115E_DT16:DA24_F-0.169-0.072-0.216-4.177-2.624-2.016
118E_DT19:DA21_F0.037-0.169-0.253-3.786-4.3682.494
120E_DT21:DA19_F-0.373-0.0940.0421.256-10.645-0.269
122E_DT23:DA17_F-0.227-0.1660.5445.357-3.541-0.137
124E_DT25:DA15_F-0.549-0.078-0.1521.308-6.419-4.199
130E_DT31:DA9_F-0.295-0.0660.072-8.674-9.716-1.549
135E_DT36:DA4_F0.195-0.195-0.341-7.4381.88-0.229

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.