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As of 20-May-2020 number of released structures: 10752
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NDB ID: 6Y42  PDB ID: 6Y42 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11EE_DA2DG3:DC37DT38_FF-0.392-0.1973.4963.5-0.5236.087-0.2391.1523.446-0.837-5.63336.254
13EE_DA4DT5:DA35DT36_FF0.317-0.523.7023.9-6.02231.1780.3130.2393.746-11.022-7.13931.973
15EE_DA6DA7:DT33DT34_FF-1.305-0.3053.337-3.9550.63333.044-0.6431.593.4591.1096.92233.279
16EE_DA7DT8:DA32DT33_FF0.586-1.213.551.271-3.71734.11-1.405-0.7723.676-6.31-2.15834.329
18EE_DA9DC10:DG30DT31_FF0.12-0.2333.45-2.405-2.69931.2160.104-0.6973.438-4.9954.4531.42
114EE_DA15DT16:DA24DT25_FF0.069-1.8563.533-2.153-2.01227.096-3.386-0.7383.642-4.2794.57927.253
116EE_DA17DG18:DC22DT23_FF-0.359-1.2053.4015.092-5.45635.286-1.1271.3473.459-8.878-8.28636.042
128EE_DA29DG30:DC10DT11_FF0.269-0.7533.587-0.0790.63236.916-1.283-0.4373.5730.9990.12536.921
132EE_DA33DA34:DT6DT7_FF-0.099-0.4343.43-1.02-4.44729.4550.139-0.0333.458-8.681.9929.799
133EE_DA34DA35:DT5DT6_FF0.0040.4053.4970.034-5.47338.3011.326-0.0023.409-8.29-0.05138.676
134EE_DA35DT36:DA4DT5_FF0.185-0.7353.3090.4460.93834.209-1.398-0.2433.291.594-0.75834.225
19EE_DC10DT11:DA29DG30_FF0.277-0.7833.5721.030.27132.336-1.458-0.2993.5720.487-1.84932.353
111EE_DC12DG13:DC27DG28_FF0.436-0.2543.8211.3871.54838.763-0.602-0.4583.8222.33-2.08838.816
119EE_DC20DT21:DA19DG20_FF-0.0391.0183.574-2.223-6.56134.3862.74-0.2913.325-10.9613.71335.056
125EE_DC26DC27:DG13DG14_FF-0.417-0.0063.3031.583-0.33329.1790.061.1723.277-0.66-3.13929.222
126EE_DC27DG28:DC12DG13_FF-0.346-0.0123.753-1.507-1.01740.5460.1130.3073.762-1.4662.17340.585
131EE_DC32DA33:DT7DG8_FF-0.792-0.2963.664-0.2441.34934.837-0.7241.283.6562.2530.40734.863
12EE_DG3DA4:DT36DC37_FF-0.284-0.0853.61-1.333-0.23539.341-0.0950.2473.618-0.3491.97939.363
112EE_DG13DG14:DC26DC27_FF-0.0010.4053.346-1.485-6.82429.7612.137-0.2963.173-13.0612.84230.552
113EE_DG14DA15:DT25DC26_FF0.035-0.0873.581.814-5.01942.5860.4280.153.566-6.878-2.48642.904
117EE_DG18DT19:DA21DC22_FF0.616-0.2283.3993.108-2.32836.245-0.025-0.5333.446-3.729-4.97936.445
121EE_DG22DT23:DA17DC18_FF0.081-1.2733.4673.164-9.36736.071-0.6150.3373.666-14.788-4.99637.358
123EE_DG24DT25:DA15DC16_FF0.652-1.4773.5533.708-5.42730.951-1.568-0.4163.801-10.027-6.85231.625
127EE_DG28DA29:DT11DC12_FF-0.6980.1333.24-7.385-7.52839.0431.0460.1743.235-11.02210.81240.388
129EE_DG30DT31:DA9DC10_FF-0.199-0.4043.4470.475-6.41233.9730.3760.4143.46-10.853-0.80434.558
14EE_DT5DA6:DT34DA35_FF0.1430.9093.4512.1891.69339.1941.1380.0633.4882.52-3.25839.288
17EE_DT8DA9:DT31DA32_FF0.5451.1313.2660.436-3.10340.3231.979-0.7413.18-4.493-0.63240.439
110EE_DT11DC12:DG28DA29_FF-0.062-0.1833.4923.697-2.32443.91-0.0110.4533.481-3.099-4.9344.116
115EE_DT16DA17:DT23DA24_FF-0.427-0.6723.125-1.252.73537.269-1.390.5093.0824.2711.95137.386
118EE_DT19DC20:DG20DA21_FF-0.753-0.1113.1631.671-0.95637.448-0.0521.3813.13-1.488-2.60137.496
120EE_DT21DG22:DC18DA19_FF0.105-0.5943.235-7.83-5.8138.596-0.198-1.0653.208-8.62411.62239.763
122EE_DT23DG24:DC16DA17_FF0.417-0.7263.1821.4381.83734.58-1.493-0.4853.1543.087-2.41634.656
124EE_DT25DC26:DG14DA15_FF0.602-0.6153.6461.846-2.18940.26-0.614-0.6393.696-3.175-2.67840.357
130EE_DT31DC32:DG8DA9_FF-0.5070.6133.145-3.229-4.81533.3611.7960.3723.064-8.3095.57233.847
135EE_DT36DG37:DC3DA4_FF0.5250.6733.229-3.468-6.68940.1081.677-1.1233.029-9.655.00340.781

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.