A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
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NDB ID: 6BJX  PDB ID: 6BJX 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6BJX|1|A|A|1046BJX|1|A|A|1040BPh
6BJX|1|A|A|1046BJX|1|A|A|105s35
6BJX|1|A|A|1046BJX|1|A|C|216ncWW
6BJX|1|A|A|1046BJX|1|A|C|217s55
6BJX|1|A|A|1046BJX|1|A|G|103s53
6BJX|1|A|A|1046BJX|1|A|G|215
6BJX|1|A|A|1046BJX|1|A|G|257ncHW
6BJX|1|A|A|1056BJX|1|A|A|104s53
6BJX|1|A|A|1056BJX|1|A|A|1050BPh
6BJX|1|A|A|1056BJX|1|A|G|215cWW
6BJX|1|A|A|1056BJX|1|A|U|107ns35
6BJX|1|A|A|1056BJX|1|A|U|258cHW
6BJX|1|A|A|1056BJX|1|A|U|259s35
6BJX|1|A|A|1136BJX|1|A|A|1130BPh
6BJX|1|A|A|1136BJX|1|A|A|206s33
6BJX|1|A|A|1136BJX|1|A|A|207tSH
6BJX|1|A|A|1136BJX|1|A|C|208ns55
6BJX|1|A|A|1136BJX|1|A|G|112s53
6BJX|1|A|A|1146BJX|1|A|A|113
6BJX|1|A|A|1146BJX|1|A|A|1140BPh
6BJX|1|A|A|1146BJX|1|A|A|115s35
6BJX|1|A|A|1146BJX|1|A|A|206tHS
6BJX|1|A|A|1146BJX|1|A|A|207s55
6BJX|1|A|A|1156BJX|1|A|A|114s53
6BJX|1|A|A|1156BJX|1|A|A|1150BPh
6BJX|1|A|A|1156BJX|1|A|A|206ns55
6BJX|1|A|A|1156BJX|1|A|G|116s35
6BJX|1|A|A|1156BJX|1|A|U|205ncWW
6BJX|1|A|A|1226BJX|1|A|A|123ns55
6BJX|1|A|A|1226BJX|1|A|A|198s53n2BP
6BJX|1|A|A|1236BJX|1|A|A|122ns55
6BJX|1|A|A|1236BJX|1|A|A|198ntWH
6BJX|1|A|A|1236BJX|1|A|C|197s33
6BJX|1|A|A|1256BJX|1|A|A|125n2BP
6BJX|1|A|A|1256BJX|1|A|C|124
6BJX|1|A|A|1316BJX|1|A|A|131n0BP
6BJX|1|A|A|1316BJX|1|B|U|244
6BJX|1|A|A|1336BJX|1|A|A|1330BPh
6BJX|1|A|A|1336BJX|1|A|C|132ns53
6BJX|1|A|A|1336BJX|1|A|G|134s35
6BJX|1|A|A|1336BJX|1|A|G|191s55
6BJX|1|A|A|1336BJX|1|A|U|190cWW
6BJX|1|A|A|1366BJX|1|A|A|1360BPh
6BJX|1|A|A|1366BJX|1|A|A|187s53
6BJX|1|A|A|1366BJX|1|A|C|137s35
6BJX|1|A|A|1366BJX|1|A|U|135s53
6BJX|1|A|A|1366BJX|1|A|U|182cWW
6BJX|1|A|A|1396BJX|1|A|A|1390BPh
6BJX|1|A|A|1396BJX|1|A|A|140s35
6BJX|1|A|A|1396BJX|1|A|A|186s55
6BJX|1|A|A|1396BJX|1|A|G|163s33
6BJX|1|A|A|1396BJX|1|A|G|164tHS
6BJX|1|A|A|1406BJX|1|A|A|139s53
6BJX|1|A|A|1406BJX|1|A|A|1400BPh
6BJX|1|A|A|1406BJX|1|A|G|141s35
6BJX|1|A|A|1406BJX|1|A|G|163tHS
6BJX|1|A|A|1466BJX|1|A|A|1460BPh
6BJX|1|A|A|1466BJX|1|A|C|145s53
6BJX|1|A|A|1466BJX|1|A|G|147s35
6BJX|1|A|A|1466BJX|1|A|G|158s55
6BJX|1|A|A|1466BJX|1|A|U|157cWW
6BJX|1|A|A|1516BJX|1|A|A|1510BPh
6BJX|1|A|A|1516BJX|1|A|A|152s35
6BJX|1|A|A|1516BJX|1|A|A|225
6BJX|1|A|A|1516BJX|1|A|A|226s55
6BJX|1|A|A|1516BJX|1|A|A|248tWW
6BJX|1|A|A|1516BJX|1|A|U|224
6BJX|1|A|A|1526BJX|1|A|A|151s53
6BJX|1|A|A|1526BJX|1|A|A|1520BPh
6BJX|1|A|A|1526BJX|1|A|A|153s35
6BJX|1|A|A|1526BJX|1|A|G|150
6BJX|1|A|A|1526BJX|1|A|G|250ntSS
6BJX|1|A|A|1526BJX|1|A|U|224cSS
6BJX|1|A|A|1536BJX|1|A|A|152s53
6BJX|1|A|A|1536BJX|1|A|A|1530BPh
6BJX|1|A|A|1536BJX|1|A|C|154s35
6BJX|1|A|A|1536BJX|1|A|C|223cSS
6BJX|1|A|A|1536BJX|1|A|G|150tHS
6BJX|1|A|A|1536BJX|1|A|G|250tSS
6BJX|1|A|A|1536BJX|1|A|G|251
6BJX|1|A|A|1596BJX|1|A|A|1590BPh
6BJX|1|A|A|1596BJX|1|A|G|158s53
6BJX|1|A|A|1596BJX|1|A|G|160s35
6BJX|1|A|A|1596BJX|1|A|U|144cWW
6BJX|1|A|A|1616BJX|1|A|A|1610BPh
6BJX|1|A|A|1616BJX|1|A|C|143ns55
6BJX|1|A|A|1616BJX|1|A|G|160s53
6BJX|1|A|A|1616BJX|1|A|U|142cWW
6BJX|1|A|A|1616BJX|1|A|U|162s35
6BJX|1|A|A|1716BJX|1|A|A|1710BPh
6BJX|1|A|A|1716BJX|1|A|A|172cSH
6BJX|1|A|A|1716BJX|1|A|C|170s53
6BJX|1|A|A|1716BJX|1|A|U|167s35
6BJX|1|A|A|1726BJX|1|A|A|171cHS
6BJX|1|A|A|1726BJX|1|A|A|1720BPh
6BJX|1|A|A|1726BJX|1|A|A|173s35
6BJX|1|A|A|1726BJX|1|B|G|254s55
6BJX|1|A|A|1736BJX|1|A|A|172s53
6BJX|1|A|A|1736BJX|1|A|A|1730BPh
6BJX|1|A|A|1736BJX|1|A|G|174s35
6BJX|1|A|A|1786BJX|1|A|A|1780BPh
6BJX|1|A|A|1786BJX|1|A|C|138ns53
6BJX|1|A|A|1786BJX|1|A|G|180s55
6BJX|1|A|A|1786BJX|1|A|U|177
6BJX|1|A|A|1836BJX|1|A|A|1830BPh
6BJX|1|A|A|1836BJX|1|A|A|184s35
6BJX|1|A|A|1836BJX|1|A|G|110cSS
6BJX|1|A|A|1836BJX|1|A|G|111
6BJX|1|A|A|1836BJX|1|A|G|188s53
6BJX|1|A|A|1836BJX|1|A|U|168s55
6BJX|1|A|A|1846BJX|1|A|A|183s53
6BJX|1|A|A|1846BJX|1|A|A|1840BPh
6BJX|1|A|A|1846BJX|1|A|C|109cSS
6BJX|1|A|A|1846BJX|1|A|C|213ns35
6BJX|1|A|A|1846BJX|1|A|G|110ncSS
6BJX|1|A|A|1846BJX|1|A|G|212tSS
6BJX|1|A|A|1866BJX|1|A|A|139s55
6BJX|1|A|A|1866BJX|1|A|A|1860BPh
6BJX|1|A|A|1866BJX|1|A|C|137cSS
6BJX|1|A|A|1866BJX|1|A|C|138ncSS
6BJX|1|A|A|1866BJX|1|A|C|1656BPh
6BJX|1|A|A|1866BJX|1|A|G|164s53
6BJX|1|A|A|1866BJX|1|A|G|181tSS
6BJX|1|A|A|1866BJX|1|A|U|182ns35
6BJX|1|A|A|1876BJX|1|A|A|136s35
6BJX|1|A|A|1876BJX|1|A|C|189s55
6BJX|1|A|A|1876BJX|1|A|G|188
6BJX|1|A|A|1876BJX|1|A|U|135cHW
6BJX|1|A|A|1876BJX|1|A|U|182s33
6BJX|1|A|A|1926BJX|1|A|A|1920BPh
6BJX|1|A|A|1926BJX|1|A|C|132ns55
6BJX|1|A|A|1926BJX|1|A|C|193s35
6BJX|1|A|A|1926BJX|1|A|G|191s53
6BJX|1|A|A|1926BJX|1|A|U|130ncWW
6BJX|1|A|A|1966BJX|1|A|A|1960BPh
6BJX|1|A|A|1966BJX|1|A|C|197s35
6BJX|1|A|A|1966BJX|1|A|G|126cWW
6BJX|1|A|A|1966BJX|1|A|G|195s53
6BJX|1|A|A|1966BJX|1|A|G|201
6BJX|1|A|A|1986BJX|1|A|A|122s35
6BJX|1|A|A|1986BJX|1|A|A|123ntHW
6BJX|1|A|A|1986BJX|1|A|A|1980BPh
6BJX|1|A|A|1986BJX|1|A|C|121ns53
6BJX|1|A|A|1986BJX|1|A|G|200s55
6BJX|1|A|A|2066BJX|1|A|A|113s33
6BJX|1|A|A|2066BJX|1|A|A|114tSH
6BJX|1|A|A|2066BJX|1|A|A|115ns55
6BJX|1|A|A|2066BJX|1|A|A|2060BPh
6BJX|1|A|A|2066BJX|1|A|U|205ns53
6BJX|1|A|A|2076BJX|1|A|A|113tHS
6BJX|1|A|A|2076BJX|1|A|A|114s55
6BJX|1|A|A|2076BJX|1|A|A|206
6BJX|1|A|A|2076BJX|1|A|A|2070BPh
6BJX|1|A|A|2076BJX|1|A|C|208s35
6BJX|1|A|A|2106BJX|1|A|A|2100BPh
6BJX|1|A|A|2106BJX|1|B|A|210s55
6BJX|1|A|A|2146BJX|1|A|A|2140BPh
6BJX|1|A|A|2146BJX|1|A|C|213s53
6BJX|1|A|A|2146BJX|1|A|G|108s55
6BJX|1|A|A|2146BJX|1|A|G|215s35
6BJX|1|A|A|2146BJX|1|A|U|107cWW
6BJX|1|A|A|2186BJX|1|A|A|2180BPh
6BJX|1|A|A|2186BJX|1|A|A|219cSH
6BJX|1|A|A|2186BJX|1|A|C|217s53
6BJX|1|A|A|2186BJX|1|A|G|103s55
6BJX|1|A|A|2186BJX|1|A|U|253s33
6BJX|1|A|A|2196BJX|1|A|A|218cHS
6BJX|1|A|A|2196BJX|1|A|A|219n0BP
6BJX|1|A|A|2196BJX|1|A|G|103s55
6BJX|1|A|A|2196BJX|1|A|G|220s35
6BJX|1|A|A|2256BJX|1|A|A|225n0BP
6BJX|1|A|A|2256BJX|1|A|A|226cSH
6BJX|1|A|A|2256BJX|1|A|A|248s556BPh
6BJX|1|A|A|2256BJX|1|A|U|224s53
6BJX|1|A|A|2256BJX|1|A|U|247s33
6BJX|1|A|A|2256BJX|1|A|U|249ntSH
6BJX|1|A|A|2266BJX|1|A|A|151s55
6BJX|1|A|A|2266BJX|1|A|A|225cHS
6BJX|1|A|A|2266BJX|1|A|A|2260BPh
6BJX|1|A|A|2266BJX|1|A|A|248s55
6BJX|1|A|A|2266BJX|1|A|G|227s35
6BJX|1|A|A|2266BJX|1|A|U|249cWW
6BJX|1|A|A|2306BJX|1|A|A|2300BPh
6BJX|1|A|A|2306BJX|1|A|A|231s35
6BJX|1|A|A|2306BJX|1|A|C|229s53
6BJX|1|A|A|2306BJX|1|A|G|245s55
6BJX|1|A|A|2306BJX|1|A|U|244cWW
6BJX|1|A|A|2316BJX|1|A|A|230s53
6BJX|1|A|A|2316BJX|1|A|A|2310BPh
6BJX|1|A|A|2316BJX|1|A|C|232s35
6BJX|1|A|A|2316BJX|1|A|U|243cWW
6BJX|1|A|A|2316BJX|1|A|U|244s55
6BJX|1|A|A|2336BJX|1|A|A|2330BPh
6BJX|1|A|A|2336BJX|1|A|C|232s53
6BJX|1|A|A|2336BJX|1|A|G|234s35
6BJX|1|A|A|2336BJX|1|A|G|242s55
6BJX|1|A|A|2336BJX|1|A|U|241cWW
6BJX|1|A|A|2356BJX|1|A|A|2350BPh
6BJX|1|A|A|2356BJX|1|A|G|234s53
6BJX|1|A|A|2356BJX|1|A|U|236
6BJX|1|A|A|2356BJX|1|A|U|239ncWW
6BJX|1|A|A|2466BJX|1|A|A|2460BPh
6BJX|1|A|A|2466BJX|1|A|C|229ns55
6BJX|1|A|A|2466BJX|1|A|G|245s53
6BJX|1|A|A|2466BJX|1|A|U|228cWW
6BJX|1|A|A|2466BJX|1|A|U|247s35
6BJX|1|A|A|2486BJX|1|A|A|151tWW
6BJX|1|A|A|2486BJX|1|A|A|225s55
6BJX|1|A|A|2486BJX|1|A|A|226s55
6BJX|1|A|A|2486BJX|1|A|A|248n0BP
6BJX|1|A|A|2486BJX|1|A|G|250s35
6BJX|1|A|A|2486BJX|1|A|U|224tHW
6BJX|1|A|A|2486BJX|1|A|U|249ns53
6BJX|1|A|A|2526BJX|1|A|A|2520BPh
6BJX|1|A|A|2526BJX|1|A|G|251s53
6BJX|1|A|A|2526BJX|1|A|U|221cWW
6BJX|1|A|A|2526BJX|1|A|U|253s35
6BJX|1|A|A|2566BJX|1|A|A|2560BPh
6BJX|1|A|A|2566BJX|1|A|C|255s53
6BJX|1|A|A|2566BJX|1|A|G|103ncWH2BPh
6BJX|1|A|A|2566BJX|1|A|G|257s35
6BJX|1|A|A|2566BJX|1|B|G|169s55
6BJX|1|A|C|1096BJX|1|A|A|184cSS
6BJX|1|A|C|1096BJX|1|A|C|1090BPh
6BJX|1|A|C|1096BJX|1|A|G|108s53
6BJX|1|A|C|1096BJX|1|A|G|110ns35
6BJX|1|A|C|1096BJX|1|A|G|212cWW
6BJX|1|A|C|1216BJX|1|A|A|198ns35
6BJX|1|A|C|1216BJX|1|A|C|1210BPh
6BJX|1|A|C|1216BJX|1|A|G|200cWW
6BJX|1|A|C|1216BJX|1|A|G|201s55
6BJX|1|A|C|1216BJX|1|A|U|120s53
6BJX|1|A|C|1246BJX|1|A|A|123
6BJX|1|A|C|1246BJX|1|A|C|124n0BP
6BJX|1|A|C|1246BJX|1|A|C|197tHW
6BJX|1|A|C|1246BJX|1|A|G|126s35
6BJX|1|A|C|1246BJX|1|A|G|201ntWS
6BJX|1|A|C|1276BJX|1|A|C|1270BPh
6BJX|1|A|C|1276BJX|1|A|C|128s35
6BJX|1|A|C|1276BJX|1|A|G|126s53
6BJX|1|A|C|1276BJX|1|A|G|195cWW
6BJX|1|A|C|1286BJX|1|A|C|127s53
6BJX|1|A|C|1286BJX|1|A|C|1280BPh
6BJX|1|A|C|1286BJX|1|A|G|129s35
6BJX|1|A|C|1286BJX|1|A|G|194cWW
6BJX|1|A|C|1286BJX|1|A|G|195s55
6BJX|1|A|C|1326BJX|1|A|A|133ns35
6BJX|1|A|C|1326BJX|1|A|A|192ns55
6BJX|1|A|C|1326BJX|1|A|C|1320BPh
6BJX|1|A|C|1326BJX|1|A|G|191cWW
6BJX|1|A|C|1326BJX|1|A|U|130s53
6BJX|1|A|C|1376BJX|1|A|A|136s53
6BJX|1|A|C|1376BJX|1|A|A|186cSS
6BJX|1|A|C|1376BJX|1|A|C|1370BPh
6BJX|1|A|C|1376BJX|1|A|C|138s35
6BJX|1|A|C|1376BJX|1|A|G|181cWW
6BJX|1|A|C|1386BJX|1|A|A|178ns35
6BJX|1|A|C|1386BJX|1|A|A|186ncSS
6BJX|1|A|C|1386BJX|1|A|C|137s53
6BJX|1|A|C|1386BJX|1|A|C|1380BPh
6BJX|1|A|C|1386BJX|1|A|G|180cWW
6BJX|1|A|C|1386BJX|1|A|G|181s55
6BJX|1|A|C|1436BJX|1|A|A|161ns55
6BJX|1|A|C|1436BJX|1|A|C|1430BPh
6BJX|1|A|C|1436BJX|1|A|G|160cWW
6BJX|1|A|C|1436BJX|1|A|U|142s53
6BJX|1|A|C|1436BJX|1|A|U|144s35
6BJX|1|A|C|1456BJX|1|A|A|146s35
6BJX|1|A|C|1456BJX|1|A|C|1450BPh
6BJX|1|A|C|1456BJX|1|A|G|158cWW
6BJX|1|A|C|1456BJX|1|A|U|144s53
6BJX|1|A|C|1546BJX|1|A|A|153s53
6BJX|1|A|C|1546BJX|1|A|C|1540BPh
6BJX|1|A|C|1546BJX|1|A|G|149cWW
6BJX|1|A|C|1546BJX|1|A|G|150s55
6BJX|1|A|C|1546BJX|1|A|U|155s35
6BJX|1|A|C|1656BJX|1|A|C|1650BPh
6BJX|1|A|C|1656BJX|1|A|C|166s35
6BJX|1|A|C|1656BJX|1|A|G|1647BPh
6BJX|1|A|C|1656BJX|1|A|G|175cWW
6BJX|1|A|C|1656BJX|1|A|G|176s55
6BJX|1|A|C|1666BJX|1|A|C|165s53
6BJX|1|A|C|1666BJX|1|A|C|1660BPh
6BJX|1|A|C|1666BJX|1|A|G|174cWW
6BJX|1|A|C|1666BJX|1|A|G|175s55
6BJX|1|A|C|1666BJX|1|A|U|167s33
6BJX|1|A|C|1706BJX|1|A|A|171s35
6BJX|1|A|C|1706BJX|1|A|C|1700BPh
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6BJX|1|B|U|2436BJX|1|B|U|244s35
6BJX|1|B|U|2446BJX|1|B|A|230cWW
6BJX|1|B|U|2446BJX|1|B|A|231s55
6BJX|1|B|U|2446BJX|1|B|G|245s35
6BJX|1|B|U|2446BJX|1|B|U|243s53
6BJX|1|B|U|2446BJX|1|B|U|2440BPh
6BJX|1|B|U|2476BJX|1|B|A|225s33
6BJX|1|B|U|2476BJX|1|B|A|246s53
6BJX|1|B|U|2476BJX|1|B|G|227cWW
6BJX|1|B|U|2476BJX|1|B|U|2470BPh
6BJX|1|B|U|2496BJX|1|B|A|226cWW
6BJX|1|B|U|2496BJX|1|B|A|248ns35
6BJX|1|B|U|2496BJX|1|B|U|249n0BP
6BJX|1|B|U|2536BJX|1|B|A|218s33
6BJX|1|B|U|2536BJX|1|B|A|252s53
6BJX|1|B|U|2536BJX|1|B|G|220cWW
6BJX|1|B|U|2536BJX|1|B|U|2530BPh
6BJX|1|B|U|2586BJX|1|B|A|104ns53
6BJX|1|B|U|2586BJX|1|B|A|105cWH
6BJX|1|B|U|2586BJX|1|B|G|257s53
6BJX|1|B|U|2586BJX|1|B|U|259s35
6BJX|1|B|U|2596BJX|1|B|A|105s53
6BJX|1|B|U|2596BJX|1|B|C|260s35
6BJX|1|B|U|2596BJX|1|B|U|107cWH
6BJX|1|B|U|2596BJX|1|B|U|258s53
6BJX|1|B|U|2596BJX|1|B|U|2590BPh


Base-PairsCount (149)Relative Frequency
cWW1020.685
tWW20.013
cWH80.054
tWH60.040
cHS60.040
tHS100.067
cSS90.060
tSS60.040
Base-PhosphateCount (290)Relative Frequency
1BPh40.014
2BPh10.003
3BPh20.007
4BPh40.014
5BPh20.007
6BPh40.014
7BPh20.007
9BPh10.003
0BPh2700.931
Base-StackingCount (186)Relative Frequency
s33140.075
s53880.473
s55840.452

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)