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NDB ID: 6BSH  PDB ID: 6BSH 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6BSH|1|R|A|106BSH|1|R|A|100BPh
6BSH|1|R|A|106BSH|1|R|C|11s35
6BSH|1|R|A|106BSH|1|R|C|9s53
6BSH|1|R|A|126BSH|1|R|A|120BPh
6BSH|1|R|A|126BSH|1|R|A|13s35
6BSH|1|R|A|126BSH|1|R|C|11s53
6BSH|1|R|A|136BSH|1|R|A|12s53
6BSH|1|R|A|136BSH|1|R|A|130BPh
6BSH|1|R|A|136BSH|1|R|U|14s35
6BSH|1|R|A|156BSH|1|R|A|150BPh
6BSH|1|R|A|156BSH|1|R|A|16s35
6BSH|1|R|A|156BSH|1|R|U|14s53
6BSH|1|R|A|166BSH|1|R|A|15s53
6BSH|1|R|A|166BSH|1|R|A|160BPh
6BSH|1|R|A|166BSH|1|R|C|17s35
6BSH|1|R|A|196BSH|1|R|A|190BPh
6BSH|1|R|A|196BSH|1|R|G|20s35
6BSH|1|R|A|196BSH|1|R|U|18s53
6BSH|1|R|A|256BSH|1|R|A|250BPh
6BSH|1|R|A|256BSH|1|R|C|24s53
6BSH|1|R|A|256BSH|1|R|U|26s35
6BSH|1|R|A|276BSH|1|R|U|26s33
6BSH|1|R|A|46BSH|1|R|A|4n0BP
6BSH|1|R|C|116BSH|1|R|A|10s53
6BSH|1|R|C|116BSH|1|R|A|12s35
6BSH|1|R|C|116BSH|1|R|C|110BPh
6BSH|1|R|C|176BSH|1|R|A|16s53
6BSH|1|R|C|176BSH|1|R|C|170BPh
6BSH|1|R|C|176BSH|1|R|U|18s35
6BSH|1|R|C|246BSH|1|R|A|25s35
6BSH|1|R|C|246BSH|1|R|C|240BPh
6BSH|1|R|C|246BSH|1|R|G|23s53
6BSH|1|R|C|86BSH|1|R|C|80BPh
6BSH|1|R|C|86BSH|1|R|C|9s35
6BSH|1|R|C|86BSH|1|R|G|7s53
6BSH|1|R|C|96BSH|1|R|A|10s35
6BSH|1|R|C|96BSH|1|R|C|8s53
6BSH|1|R|C|96BSH|1|R|C|90BPh
6BSH|1|R|G|206BSH|1|R|A|19s53
6BSH|1|R|G|206BSH|1|R|G|200BPh
6BSH|1|R|G|206BSH|1|R|U|21s35
6BSH|1|R|G|226BSH|1|R|G|220BPh
6BSH|1|R|G|226BSH|1|R|G|23s35
6BSH|1|R|G|226BSH|1|R|U|21s53
6BSH|1|R|G|236BSH|1|R|C|24s35
6BSH|1|R|G|236BSH|1|R|G|22s53
6BSH|1|R|G|236BSH|1|R|G|230BPh
6BSH|1|R|G|36BSH|1|R|G|3n1BP
6BSH|1|R|G|66BSH|1|R|G|60BPh
6BSH|1|R|G|66BSH|1|R|G|7s35
6BSH|1|R|G|76BSH|1|R|C|8s35
6BSH|1|R|G|76BSH|1|R|G|6s53
6BSH|1|R|G|76BSH|1|R|G|70BPh
6BSH|1|R|U|146BSH|1|R|A|13s53
6BSH|1|R|U|146BSH|1|R|A|15s35
6BSH|1|R|U|146BSH|1|R|U|140BPh
6BSH|1|R|U|186BSH|1|R|A|19s35
6BSH|1|R|U|186BSH|1|R|C|17s53
6BSH|1|R|U|186BSH|1|R|U|180BPh
6BSH|1|R|U|216BSH|1|R|G|20s53
6BSH|1|R|U|216BSH|1|R|G|22s35
6BSH|1|R|U|216BSH|1|R|U|210BPh
6BSH|1|R|U|266BSH|1|R|A|25s53
6BSH|1|R|U|266BSH|1|R|A|27s33
6BSH|1|R|U|266BSH|1|R|U|260BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (21)Relative Frequency
0BPh211.000
Base-StackingCount (9)Relative Frequency
s3310.111
s5380.889

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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