A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-May-2019 number of released structures: 10174
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NDB ID: 6DOE  PDB ID: 6DOE 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6DOE|1|B|A|16DOE|1|B|A|10BPh
6DOE|1|B|A|16DOE|1|B|C|2s35
6DOE|1|B|A|36DOE|1|B|A|30BPh
6DOE|1|B|A|36DOE|1|B|C|2s53
6DOE|1|B|C|26DOE|1|B|A|1s53
6DOE|1|B|C|26DOE|1|B|A|3s35
6DOE|1|B|C|26DOE|1|B|C|20BPh
6DOE|1|b|G|66DOE|1|b|G|6n0BP


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (3)Relative Frequency
0BPh31.000
Base-StackingCount (1)Relative Frequency
s5311.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)