A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: 6DOQ  PDB ID: 6DOQ 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6DOQ|1|B|A|16DOQ|1|B|A|1n0BP
6DOQ|1|B|A|16DOQ|1|B|C|2s35
6DOQ|1|B|A|36DOQ|1|B|A|30BPh
6DOQ|1|B|A|36DOQ|1|B|C|2s53
6DOQ|1|B|A|36DOQ|1|B|U|4||As35
6DOQ|1|B|C|26DOQ|1|B|A|1s53
6DOQ|1|B|C|26DOQ|1|B|A|3s35
6DOQ|1|B|C|26DOQ|1|B|C|20BPh
6DOQ|1|B|U|4||A6DOQ|1|B|A|3s53
6DOQ|1|B|U|4||A6DOQ|1|B|U|4||An0BP
6DOQ|1|B|U|4||A6DOQ|1|b|C|5||As35
6DOQ|1|b|C|5||A6DOQ|1|B|U|4||As53
6DOQ|1|b|C|5||A6DOQ|1|b|C|5||A0BPh
6DOQ|1|b|C|5||A6DOQ|1|b|G|6s35
6DOQ|1|b|G|66DOQ|1|b|C|5||As53
6DOQ|1|b|G|66DOQ|1|b|G|60BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (4)Relative Frequency
0BPh41.000
Base-StackingCount (1)Relative Frequency
s5311.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)