A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: 6DPF  PDB ID: 6DPF 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6DPF|1|B|A|16DPF|1|B|A|1n0BP
6DPF|1|B|A|16DPF|1|B|C|2s35
6DPF|1|B|A|36DPF|1|B|A|30BPh
6DPF|1|B|A|36DPF|1|B|C|2s53
6DPF|1|B|A|36DPF|1|B|U|4s35
6DPF|1|B|C|26DPF|1|B|A|1s53
6DPF|1|B|C|26DPF|1|B|A|3s35
6DPF|1|B|C|26DPF|1|B|C|20BPh
6DPF|1|B|U|46DPF|1|B|A|3s53
6DPF|1|B|U|46DPF|1|B|U|40BPh
6DPF|1|B|U|46DPF|1|b|C|5s35
6DPF|1|b|C|56DPF|1|B|U|4s53
6DPF|1|b|C|56DPF|1|b|C|50BPh
6DPF|1|b|C|56DPF|1|b|G|6s35
6DPF|1|b|G|66DPF|1|b|C|5s53
6DPF|1|b|G|66DPF|1|b|G|6n0BP


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (4)Relative Frequency
0BPh41.000
Base-StackingCount (1)Relative Frequency
s5311.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)