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NDB ID: 6HMI  PDB ID: 6HMI 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6HMI|1|A|A|16HMI|1|B|U|22s53
6HMI|1|A|A|36HMI|1|A|A|30BPh
6HMI|1|A|A|36HMI|1|A|C|4s35
6HMI|1|A|A|36HMI|1|A|U|2s53
6HMI|1|A|A|36HMI|1|B|C|21s55
6HMI|1|A|A|36HMI|1|B|U|20cWW
6HMI|1|A|A|76HMI|1|A|A|70BPh
6HMI|1|A|A|76HMI|1|A|C|8s35
6HMI|1|A|A|76HMI|1|B|A|17s55
6HMI|1|A|A|76HMI|1|B|U|16cWW
6HMI|1|A|C|46HMI|1|A|A|3s53
6HMI|1|A|C|46HMI|1|A|C|40BPh
6HMI|1|A|C|46HMI|1|B|G|19cWW
6HMI|1|A|C|86HMI|1|A|A|7s53
6HMI|1|A|C|86HMI|1|A|C|80BPh
6HMI|1|A|C|86HMI|1|A|C|9s35
6HMI|1|A|C|86HMI|1|B|G|15cWW
6HMI|1|A|C|96HMI|1|A|C|8s53
6HMI|1|A|C|96HMI|1|A|C|90BPh
6HMI|1|A|C|96HMI|1|A|U|10s35
6HMI|1|A|C|96HMI|1|B|G|13cWW
6HMI|1|A|C|96HMI|1|B|G|15s55
6HMI|1|A|U|106HMI|1|A|C|9s53
6HMI|1|A|U|106HMI|1|A|U|100BPh
6HMI|1|A|U|106HMI|1|B|G|12cWW
6HMI|1|A|U|106HMI|1|B|G|13ns55
6HMI|1|A|U|26HMI|1|A|A|3s35
6HMI|1|A|U|26HMI|1|A|U|20BPh
6HMI|1|A|U|26HMI|1|B|C|21cWW
6HMI|1|A|U|26HMI|1|B|U|22s55
6HMI|1|B|A|176HMI|1|A|A|7s55
6HMI|1|B|A|176HMI|1|B|A|170BPh
6HMI|1|B|A|176HMI|1|B|A|18s35
6HMI|1|B|A|176HMI|1|B|U|16s53
6HMI|1|B|A|186HMI|1|B|A|17s53
6HMI|1|B|A|186HMI|1|B|A|180BPh
6HMI|1|B|A|186HMI|1|B|G|19s35
6HMI|1|B|C|216HMI|1|A|A|3s55
6HMI|1|B|C|216HMI|1|A|U|2cWW
6HMI|1|B|C|216HMI|1|B|C|210BPh
6HMI|1|B|C|216HMI|1|B|U|20s53
6HMI|1|B|C|216HMI|1|B|U|22s35
6HMI|1|B|G|126HMI|1|A|U|10cWW
6HMI|1|B|G|126HMI|1|B|G|120BPh
6HMI|1|B|G|126HMI|1|B|G|13s35
6HMI|1|B|G|136HMI|1|A|C|9cWW
6HMI|1|B|G|136HMI|1|A|U|10ns55
6HMI|1|B|G|136HMI|1|B|G|12s53
6HMI|1|B|G|136HMI|1|B|G|130BPh
6HMI|1|B|G|136HMI|1|B|G|15ns35
6HMI|1|B|G|156HMI|1|A|C|8cWW
6HMI|1|B|G|156HMI|1|A|C|9s55
6HMI|1|B|G|156HMI|1|B|A|14
6HMI|1|B|G|156HMI|1|B|G|13ns53
6HMI|1|B|G|156HMI|1|B|G|150BPh
6HMI|1|B|G|156HMI|1|B|U|16s35
6HMI|1|B|G|196HMI|1|A|C|4cWW
6HMI|1|B|G|196HMI|1|B|A|18s53
6HMI|1|B|G|196HMI|1|B|G|190BPh
6HMI|1|B|G|196HMI|1|B|U|20s35
6HMI|1|B|U|166HMI|1|A|A|7cWW
6HMI|1|B|U|166HMI|1|B|A|17s35
6HMI|1|B|U|166HMI|1|B|G|15s53
6HMI|1|B|U|166HMI|1|B|U|160BPh
6HMI|1|B|U|206HMI|1|A|A|3cWW
6HMI|1|B|U|206HMI|1|B|C|21s35
6HMI|1|B|U|206HMI|1|B|G|19s53
6HMI|1|B|U|206HMI|1|B|U|200BPh
6HMI|1|B|U|226HMI|1|A|A|1s35
6HMI|1|B|U|226HMI|1|A|U|2s55
6HMI|1|B|U|226HMI|1|B|C|21s53
6HMI|1|B|U|226HMI|1|B|U|220BPh


Base-PairsCount (7)Relative Frequency
cWW71.000
Base-PhosphateCount (17)Relative Frequency
0BPh171.000
Base-StackingCount (8)Relative Frequency
s5340.500
s5540.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)