A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6JCY  PDB ID: 6JCY 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6JCY|1|I|A|76JCY|1|I|A|70BPh
6JCY|1|I|A|76JCY|1|I|G|6s53
6JCY|1|I|C|26JCY|1|I|C|20BPh
6JCY|1|I|C|26JCY|1|I|C|3s35
6JCY|1|I|C|36JCY|1|I|C|2s53
6JCY|1|I|C|36JCY|1|I|C|30BPh
6JCY|1|I|C|36JCY|1|I|U|4s35
6JCY|1|I|C|56JCY|1|I|C|50BPh
6JCY|1|I|C|56JCY|1|I|G|6ns35
6JCY|1|I|C|56JCY|1|I|U|4s53
6JCY|1|I|G|66JCY|1|I|A|7s35
6JCY|1|I|G|66JCY|1|I|C|5ns53
6JCY|1|I|G|66JCY|1|I|G|60BPh
6JCY|1|I|U|46JCY|1|I|C|3s53
6JCY|1|I|U|46JCY|1|I|C|5s35
6JCY|1|I|U|46JCY|1|I|U|40BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (6)Relative Frequency
0BPh61.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)