A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6KQF  PDB ID: 6KQF 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6KQF|1|I|A|56KQF|1|I|A|50BPh
6KQF|1|I|A|56KQF|1|I|G|4s53
6KQF|1|I|C|16KQF|1|I|C|10BPh
6KQF|1|I|C|16KQF|1|I|U|2s35
6KQF|1|I|C|36KQF|1|I|C|30BPh
6KQF|1|I|C|36KQF|1|I|G|4s35
6KQF|1|I|C|36KQF|1|I|U|2s53
6KQF|1|I|G|46KQF|1|I|A|5s35
6KQF|1|I|G|46KQF|1|I|C|3s53
6KQF|1|I|G|46KQF|1|I|G|40BPh
6KQF|1|I|U|26KQF|1|I|C|1s53
6KQF|1|I|U|26KQF|1|I|C|3s35
6KQF|1|I|U|26KQF|1|I|U|20BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (5)Relative Frequency
0BPh51.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)