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As of 12-Aug-2020 number of released structures: 10887
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NDB ID: 6Q8V  PDB ID: 6Q8V 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6Q8V|1|A|A|166Q8V|1|A|A|160BPh
6Q8V|1|A|A|166Q8V|1|A|A|5s33
6Q8V|1|A|A|166Q8V|1|A|G|15s53
6Q8V|1|A|A|166Q8V|1|A|G|17
6Q8V|1|A|A|166Q8V|1|A|G|4
6Q8V|1|A|A|166Q8V|1|A|G|7tHS
6Q8V|1|A|A|56Q8V|1|A|A|16s33
6Q8V|1|A|A|56Q8V|1|A|G|4ns33
6Q8V|1|A|A|56Q8V|1|A|G|7s35
6Q8V|1|A|A|66Q8V|1|A|A|6n0BP
6Q8V|1|A|A|96Q8V|1|A|A|90BPh
6Q8V|1|A|A|96Q8V|1|A|C|10s35
6Q8V|1|A|A|96Q8V|1|A|G|14tHS
6Q8V|1|A|C|106Q8V|1|A|A|9s53n9BP
6Q8V|1|A|C|106Q8V|1|A|C|100BPh
6Q8V|1|A|C|106Q8V|1|A|C|11s35
6Q8V|1|A|C|106Q8V|1|A|G|13cWW
6Q8V|1|A|C|106Q8V|1|A|G|14s55
6Q8V|1|A|C|116Q8V|1|A|C|10s53
6Q8V|1|A|C|116Q8V|1|A|C|110BPh
6Q8V|1|A|C|116Q8V|1|A|G|12cWW
6Q8V|1|A|C|116Q8V|1|A|G|13s55
6Q8V|1|A|C|186Q8V|1|A|C|180BPh
6Q8V|1|A|C|186Q8V|1|A|C|19s35
6Q8V|1|A|C|186Q8V|1|A|G|17s53
6Q8V|1|A|C|186Q8V|1|A|G|2cWW
6Q8V|1|A|C|196Q8V|1|A|C|18s53
6Q8V|1|A|C|196Q8V|1|A|C|190BPh
6Q8V|1|A|C|196Q8V|1|A|G|1cWW
6Q8V|1|A|C|196Q8V|1|A|G|2s55
6Q8V|1|A|C|36Q8V|1|A|C|30BPh
6Q8V|1|A|C|36Q8V|1|A|G|17cWW
6Q8V|1|A|C|36Q8V|1|A|G|2s53
6Q8V|1|A|C|36Q8V|1|A|G|4s35
6Q8V|1|A|G|16Q8V|1|A|C|19cWW
6Q8V|1|A|G|16Q8V|1|A|G|1n0BP
6Q8V|1|A|G|16Q8V|1|A|G|2s35
6Q8V|1|A|G|126Q8V|1|A|C|11cWW
6Q8V|1|A|G|126Q8V|1|A|G|120BPh
6Q8V|1|A|G|126Q8V|1|A|G|13s35
6Q8V|1|A|G|136Q8V|1|A|C|10cWW
6Q8V|1|A|G|136Q8V|1|A|C|11s55
6Q8V|1|A|G|136Q8V|1|A|G|12s53
6Q8V|1|A|G|136Q8V|1|A|G|130BPh
6Q8V|1|A|G|136Q8V|1|A|G|14s35
6Q8V|1|A|G|146Q8V|1|A|A|9tSH
6Q8V|1|A|G|146Q8V|1|A|C|10s55
6Q8V|1|A|G|146Q8V|1|A|G|13s53
6Q8V|1|A|G|146Q8V|1|A|G|140BPh
6Q8V|1|A|G|146Q8V|1|A|G|7
6Q8V|1|A|G|156Q8V|1|A|A|16s35
6Q8V|1|A|G|156Q8V|1|A|A|93BPh
6Q8V|1|A|G|156Q8V|1|A|G|15n0BP
6Q8V|1|A|G|156Q8V|1|A|G|7s33
6Q8V|1|A|G|176Q8V|1|A|A|16
6Q8V|1|A|G|176Q8V|1|A|C|18s35
6Q8V|1|A|G|176Q8V|1|A|C|3cWW
6Q8V|1|A|G|176Q8V|1|A|G|170BPh
6Q8V|1|A|G|176Q8V|1|A|G|4s55
6Q8V|1|A|G|26Q8V|1|A|C|18cWW
6Q8V|1|A|G|26Q8V|1|A|C|19s55
6Q8V|1|A|G|26Q8V|1|A|C|3s35
6Q8V|1|A|G|26Q8V|1|A|G|1s53
6Q8V|1|A|G|26Q8V|1|A|G|20BPh
6Q8V|1|A|G|46Q8V|1|A|A|5ns33
6Q8V|1|A|G|46Q8V|1|A|C|3s53
6Q8V|1|A|G|46Q8V|1|A|G|17s55
6Q8V|1|A|G|46Q8V|1|A|G|40BPh
6Q8V|1|A|G|76Q8V|1|A|A|16tSH
6Q8V|1|A|G|76Q8V|1|A|A|5s53
6Q8V|1|A|G|76Q8V|1|A|G|15s33
6Q8V|1|A|G|76Q8V|1|A|G|70BPh


Base-PairsCount (7)Relative Frequency
cWW50.714
tHS20.286
Base-PhosphateCount (15)Relative Frequency
3BPh10.067
0BPh140.933
Base-StackingCount (9)Relative Frequency
s3320.222
s5330.333
s5540.444

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)