A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
Search for released structures

NDB ID: 6QCV  PDB ID: 6QCV 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6QCV|1|M|A|106QCV|1|M|A|100BPh
6QCV|1|M|A|106QCV|1|M|A|11s35
6QCV|1|M|A|106QCV|1|M|A|8s53
6QCV|1|M|A|106QCV|1|M|U|9
6QCV|1|M|A|116QCV|1|M|A|10s53
6QCV|1|M|A|116QCV|1|M|A|110BPh
6QCV|1|M|A|116QCV|1|M|U|12s35
6QCV|1|M|A|116QCV|1|R|U|20cWW
6QCV|1|M|A|136QCV|1|M|A|130BPh
6QCV|1|M|A|136QCV|1|M|G|14s35
6QCV|1|M|A|136QCV|1|M|U|12s53
6QCV|1|M|A|136QCV|1|R|A|19s55
6QCV|1|M|A|136QCV|1|R|U|18cWW
6QCV|1|M|A|26QCV|1|M|A|20BPh
6QCV|1|M|A|26QCV|1|M|A|3s33
6QCV|1|M|A|36QCV|1|M|A|2s33
6QCV|1|M|A|36QCV|1|M|U|4s55
6QCV|1|M|A|86QCV|1|M|A|10s35
6QCV|1|M|A|86QCV|1|M|U|9
6QCV|1|M|A|86QCV|1|R|U|21ns33
6QCV|1|M|C|66QCV|1|M|C|60BPh
6QCV|1|M|C|66QCV|1|M|G|5
6QCV|1|M|C|66QCV|1|M|U|7s35
6QCV|1|M|G|16QCV|1|M|G|1n0BP
6QCV|1|M|G|146QCV|1|M|A|13s53
6QCV|1|M|G|146QCV|1|M|G|140BPh
6QCV|1|M|G|146QCV|1|R|C|17cWW
6QCV|1|M|G|146QCV|1|R|U|18s55
6QCV|1|M|G|56QCV|1|M|C|6
6QCV|1|M|G|56QCV|1|M|G|50BPh
6QCV|1|M|U|126QCV|1|M|A|11s53
6QCV|1|M|U|126QCV|1|M|A|13s35
6QCV|1|M|U|126QCV|1|M|U|120BPh
6QCV|1|M|U|126QCV|1|R|A|19cWW
6QCV|1|M|U|46QCV|1|M|A|3s55
6QCV|1|M|U|46QCV|1|M|U|40BPh
6QCV|1|M|U|76QCV|1|M|C|6s53
6QCV|1|M|U|76QCV|1|M|U|70BPh
6QCV|1|M|U|96QCV|1|M|A|8
6QCV|1|M|U|96QCV|1|M|U|9
6QCV|1|R|A|196QCV|1|M|A|13s55
6QCV|1|R|A|196QCV|1|M|U|12cWW
6QCV|1|R|A|196QCV|1|R|A|190BPh
6QCV|1|R|A|196QCV|1|R|U|18s53
6QCV|1|R|A|196QCV|1|R|U|20s35
6QCV|1|R|A|26QCV|1|R|A|20BPh
6QCV|1|R|A|26QCV|1|R|U|1s53
6QCV|1|R|A|26QCV|1|R|U|3s35
6QCV|1|R|A|46QCV|1|R|A|40BPh
6QCV|1|R|A|46QCV|1|R|C|6s55
6QCV|1|R|A|46QCV|1|R|U|3s33
6QCV|1|R|A|46QCV|1|V|G|14s53
6QCV|1|R|C|116QCV|1|R|C|110BPh
6QCV|1|R|C|116QCV|1|R|U|12ns35
6QCV|1|R|C|146QCV|1|R|C|14
6QCV|1|R|C|176QCV|1|M|G|14cWW
6QCV|1|R|C|176QCV|1|R|C|170BPh
6QCV|1|R|C|176QCV|1|R|G|16s53
6QCV|1|R|C|176QCV|1|R|U|18s35
6QCV|1|R|C|56QCV|1|R|C|50BPh
6QCV|1|R|C|66QCV|1|R|A|4s55
6QCV|1|R|C|66QCV|1|R|C|60BPh
6QCV|1|R|C|66QCV|1|R|U|7s35
6QCV|1|R|C|66QCV|1|V|G|14cWW
6QCV|1|R|C|86QCV|1|R|C|80BPh
6QCV|1|R|C|86QCV|1|R|U|7s53
6QCV|1|R|C|86QCV|1|R|U|9s35
6QCV|1|R|C|86QCV|1|V|A|13ns55
6QCV|1|R|C|86QCV|1|V|G|12cWW
6QCV|1|R|G|106QCV|1|R|G|101BPh
6QCV|1|R|G|106QCV|1|R|U|9s33
6QCV|1|R|G|166QCV|1|R|C|17s35
6QCV|1|R|G|166QCV|1|R|G|160BPh
6QCV|1|R|U|16QCV|1|R|A|2s35
6QCV|1|R|U|126QCV|1|R|C|11ns53
6QCV|1|R|U|126QCV|1|R|U|120BPh
6QCV|1|R|U|136QCV|1|R|U|13n0BP
6QCV|1|R|U|156QCV|1|R|C|149BPh
6QCV|1|R|U|156QCV|1|R|U|150BPh
6QCV|1|R|U|186QCV|1|M|A|13cWW
6QCV|1|R|U|186QCV|1|M|G|14s55
6QCV|1|R|U|186QCV|1|R|A|19s35
6QCV|1|R|U|186QCV|1|R|C|17s53
6QCV|1|R|U|186QCV|1|R|U|180BPh
6QCV|1|R|U|206QCV|1|M|A|11cWW
6QCV|1|R|U|206QCV|1|R|A|19s53
6QCV|1|R|U|206QCV|1|R|U|200BPh
6QCV|1|R|U|206QCV|1|R|U|21
6QCV|1|R|U|216QCV|1|M|A|8ns33
6QCV|1|R|U|216QCV|1|R|U|20
6QCV|1|R|U|216QCV|1|R|U|21
6QCV|1|R|U|36QCV|1|R|A|2s53
6QCV|1|R|U|36QCV|1|R|A|4s33
6QCV|1|R|U|36QCV|1|R|U|30BPh
6QCV|1|R|U|76QCV|1|R|C|6s53
6QCV|1|R|U|76QCV|1|R|C|8s35
6QCV|1|R|U|76QCV|1|R|U|70BPh
6QCV|1|R|U|76QCV|1|V|A|13cWW
6QCV|1|R|U|76QCV|1|V|G|14s55
6QCV|1|R|U|96QCV|1|R|C|8s53
6QCV|1|R|U|96QCV|1|R|G|10s33
6QCV|1|R|U|96QCV|1|R|U|90BPh
6QCV|1|R|U|96QCV|1|V|A|11cWW
6QCV|1|R|U|96QCV|1|V|G|12s55
6QCV|1|V|A|16QCV|1|V|A|10tHS
6QCV|1|V|A|16QCV|1|V|G|2s35
6QCV|1|V|A|106QCV|1|V|A|1tSH
6QCV|1|V|A|106QCV|1|V|A|100BPh
6QCV|1|V|A|106QCV|1|V|C|9s53
6QCV|1|V|A|106QCV|1|V|G|2s55
6QCV|1|V|A|116QCV|1|R|U|9cWW
6QCV|1|V|A|116QCV|1|V|G|12s35
6QCV|1|V|A|136QCV|1|R|C|8ns55
6QCV|1|V|A|136QCV|1|R|U|7cWW
6QCV|1|V|A|136QCV|1|V|A|130BPh
6QCV|1|V|A|136QCV|1|V|G|12s53
6QCV|1|V|A|136QCV|1|V|G|14s35
6QCV|1|V|A|46QCV|1|V|A|40BPh
6QCV|1|V|A|46QCV|1|V|A|7cSW
6QCV|1|V|A|46QCV|1|V|G|5s33
6QCV|1|V|A|46QCV|1|V|U|3s53
6QCV|1|V|A|76QCV|1|V|A|4cWS
6QCV|1|V|A|76QCV|1|V|A|7n0BP
6QCV|1|V|A|76QCV|1|V|A|8s35
6QCV|1|V|A|86QCV|1|V|A|7s53
6QCV|1|V|A|86QCV|1|V|C|9s35
6QCV|1|V|A|86QCV|1|V|U|3cWW
6QCV|1|V|C|96QCV|1|V|A|10s35
6QCV|1|V|C|96QCV|1|V|A|8s53
6QCV|1|V|C|96QCV|1|V|C|90BPh
6QCV|1|V|C|96QCV|1|V|G|2cWW
6QCV|1|V|G|126QCV|1|R|C|8cWW
6QCV|1|V|G|126QCV|1|R|U|9s55
6QCV|1|V|G|126QCV|1|V|A|11s53
6QCV|1|V|G|126QCV|1|V|A|13s35
6QCV|1|V|G|126QCV|1|V|G|120BPh
6QCV|1|V|G|146QCV|1|R|A|4s35
6QCV|1|V|G|146QCV|1|R|C|6cWW
6QCV|1|V|G|146QCV|1|R|U|7s55
6QCV|1|V|G|146QCV|1|V|A|13s53
6QCV|1|V|G|146QCV|1|V|G|140BPh
6QCV|1|V|G|26QCV|1|V|A|1s53
6QCV|1|V|G|26QCV|1|V|A|10s55
6QCV|1|V|G|26QCV|1|V|C|9cWW
6QCV|1|V|G|26QCV|1|V|G|20BPh
6QCV|1|V|G|26QCV|1|V|U|3s35
6QCV|1|V|G|56QCV|1|V|A|4s33
6QCV|1|V|G|56QCV|1|V|G|51BPh
6QCV|1|V|U|36QCV|1|V|A|4s35
6QCV|1|V|U|36QCV|1|V|A|8cWW
6QCV|1|V|U|36QCV|1|V|G|2s53
6QCV|1|V|U|36QCV|1|V|U|30BPh
6QCV|1|V|U|66QCV|1|V|U|60BPh


Base-PairsCount (12)Relative Frequency
cWW100.833
cWS10.083
tHS10.083
Base-PhosphateCount (38)Relative Frequency
1BPh20.053
9BPh10.026
0BPh350.921
Base-StackingCount (21)Relative Frequency
s3340.190
s53100.476
s5570.333

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)