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NDB ID: 6QIR  PDB ID: 6QIR 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6QIR|1|A|A|36QIR|1|B|A|6s55
6QIR|1|A|A|66QIR|1|A|A|60BPh
6QIR|1|A|A|66QIR|1|A|G|7s35
6QIR|1|A|A|66QIR|1|B|A|3s55
6QIR|1|A|C|26QIR|1|A|C|20BPh
6QIR|1|A|C|26QIR|1|A|G|1s53
6QIR|1|A|C|26QIR|1|B|G|7cWW
6QIR|1|A|C|56QIR|1|A|C|50BPh
6QIR|1|A|C|56QIR|1|A|G|4s538BPh
6QIR|1|A|C|86QIR|1|A|C|80BPh
6QIR|1|A|C|86QIR|1|A|G|7s53
6QIR|1|A|C|86QIR|1|B|G|1cWW
6QIR|1|A|G|16QIR|1|A|C|2s35
6QIR|1|A|G|16QIR|1|A|G|10BPh
6QIR|1|A|G|16QIR|1|B|C|8cWW
6QIR|1|A|G|46QIR|1|A|C|5s35
6QIR|1|A|G|46QIR|1|A|G|4n0BP
6QIR|1|A|G|76QIR|1|A|A|6s53
6QIR|1|A|G|76QIR|1|A|C|8s35
6QIR|1|A|G|76QIR|1|A|G|70BPh
6QIR|1|A|G|76QIR|1|B|C|2cWW
6QIR|1|B|A|36QIR|1|A|A|6s55
6QIR|1|B|A|66QIR|1|A|A|3s55
6QIR|1|B|A|66QIR|1|B|A|60BPh
6QIR|1|B|A|66QIR|1|B|G|7s35
6QIR|1|B|C|26QIR|1|A|G|7cWW
6QIR|1|B|C|26QIR|1|B|C|20BPh
6QIR|1|B|C|26QIR|1|B|G|1s53
6QIR|1|B|C|56QIR|1|B|C|50BPh
6QIR|1|B|C|56QIR|1|B|G|4s53
6QIR|1|B|C|56QIR|1|C|C|5tWW
6QIR|1|B|C|86QIR|1|A|G|1cWW
6QIR|1|B|C|86QIR|1|B|C|80BPh
6QIR|1|B|C|86QIR|1|B|G|7s53
6QIR|1|B|G|16QIR|1|A|C|8cWW
6QIR|1|B|G|16QIR|1|B|C|2s35
6QIR|1|B|G|16QIR|1|B|G|1n0BP
6QIR|1|B|G|46QIR|1|B|C|5s35
6QIR|1|B|G|46QIR|1|B|G|40BPh
6QIR|1|B|G|46QIR|1|C|G|4tWW
6QIR|1|B|G|76QIR|1|A|C|2cWW
6QIR|1|B|G|76QIR|1|B|A|6s53
6QIR|1|B|G|76QIR|1|B|C|8s35
6QIR|1|B|G|76QIR|1|B|G|70BPh
6QIR|1|C|A|36QIR|1|D|A|6s55
6QIR|1|C|A|66QIR|1|C|A|60BPh
6QIR|1|C|A|66QIR|1|C|G|7s35
6QIR|1|C|A|66QIR|1|D|A|3s55
6QIR|1|C|C|26QIR|1|C|C|20BPh
6QIR|1|C|C|26QIR|1|C|G|1s53
6QIR|1|C|C|26QIR|1|D|G|7cWW
6QIR|1|C|C|56QIR|1|B|C|5tWW
6QIR|1|C|C|56QIR|1|C|C|50BPh
6QIR|1|C|C|56QIR|1|C|G|4s53
6QIR|1|C|C|86QIR|1|C|C|80BPh
6QIR|1|C|C|86QIR|1|C|G|7s53
6QIR|1|C|C|86QIR|1|D|G|1cWW
6QIR|1|C|G|16QIR|1|C|C|2s35
6QIR|1|C|G|16QIR|1|C|G|10BPh
6QIR|1|C|G|16QIR|1|D|C|8cWW
6QIR|1|C|G|46QIR|1|B|G|4tWW
6QIR|1|C|G|46QIR|1|C|C|5s35
6QIR|1|C|G|46QIR|1|C|G|40BPh
6QIR|1|C|G|76QIR|1|C|A|6s53
6QIR|1|C|G|76QIR|1|C|C|8s35
6QIR|1|C|G|76QIR|1|C|G|70BPh
6QIR|1|C|G|76QIR|1|D|C|2cWW
6QIR|1|D|A|36QIR|1|C|A|6s55
6QIR|1|D|A|66QIR|1|C|A|3s55
6QIR|1|D|A|66QIR|1|D|A|60BPh
6QIR|1|D|A|66QIR|1|D|G|7s35
6QIR|1|D|C|26QIR|1|C|G|7cWW
6QIR|1|D|C|26QIR|1|D|C|20BPh
6QIR|1|D|C|26QIR|1|D|G|1s53
6QIR|1|D|C|56QIR|1|D|C|50BPh
6QIR|1|D|C|56QIR|1|D|G|4s539BPh
6QIR|1|D|C|86QIR|1|C|G|1cWW
6QIR|1|D|C|86QIR|1|D|C|80BPh
6QIR|1|D|C|86QIR|1|D|G|7s53
6QIR|1|D|G|16QIR|1|C|C|8cWW
6QIR|1|D|G|16QIR|1|D|C|2s35
6QIR|1|D|G|16QIR|1|D|G|10BPh
6QIR|1|D|G|46QIR|1|D|C|5s35
6QIR|1|D|G|46QIR|1|D|G|4n0BP
6QIR|1|D|G|76QIR|1|C|C|2cWW
6QIR|1|D|G|76QIR|1|D|A|6s53
6QIR|1|D|G|76QIR|1|D|C|8s35
6QIR|1|D|G|76QIR|1|D|G|70BPh


Base-PairsCount (10)Relative Frequency
cWW80.800
tWW20.200
Base-PhosphateCount (27)Relative Frequency
8BPh10.037
9BPh10.037
0BPh250.926
Base-StackingCount (16)Relative Frequency
s53120.750
s5540.250

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)