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NDB ID: 6R47  PDB ID: 6R47 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6R47|1|A|A|186R47|1|A|A|180BPh
6R47|1|A|A|186R47|1|A|C|17
6R47|1|A|A|186R47|1|A|C|4
6R47|1|A|A|186R47|1|A|G|3
6R47|1|A|A|186R47|1|A|U|19s55
6R47|1|A|A|206R47|1|A|A|21s35
6R47|1|A|A|206R47|1|A|C|16ncWS
6R47|1|A|A|206R47|1|A|C|4cHS
6R47|1|A|A|206R47|1|A|U|19s53
6R47|1|A|A|216R47|1|A|A|20s53
6R47|1|A|A|216R47|1|A|A|21n0BP
6R47|1|A|A|216R47|1|A|A|22s35
6R47|1|A|A|216R47|1|A|C|5ncHS
6R47|1|A|A|216R47|1|A|G|15cWS
6R47|1|A|A|226R47|1|A|A|21s53
6R47|1|A|A|226R47|1|A|A|220BPh
6R47|1|A|A|226R47|1|A|A|24s35
6R47|1|A|A|226R47|1|A|G|15
6R47|1|A|A|226R47|1|A|G|6
6R47|1|A|A|246R47|1|A|A|22s53
6R47|1|A|A|246R47|1|A|A|24n0BP
6R47|1|A|A|246R47|1|A|C|23
6R47|1|A|A|246R47|1|A|G|14cSS
6R47|1|A|A|246R47|1|A|G|25s35
6R47|1|A|A|316R47|1|A|A|310BPh
6R47|1|A|A|316R47|1|A|G|32s35
6R47|1|A|A|316R47|1|A|U|43ncSS
6R47|1|A|A|336R47|1|A|A|330BPh
6R47|1|A|A|336R47|1|A|A|39
6R47|1|A|A|336R47|1|A|C|41ncWW
6R47|1|A|A|336R47|1|A|G|42s55
6R47|1|A|A|336R47|1|A|U|7s35
6R47|1|A|A|386R47|1|A|A|380BPh
6R47|1|A|A|386R47|1|A|A|39s35
6R47|1|A|A|386R47|1|A|C|9ns55
6R47|1|A|A|386R47|1|A|G|37s53
6R47|1|A|A|386R47|1|A|U|8cWW
6R47|1|A|A|396R47|1|A|A|33
6R47|1|A|A|396R47|1|A|A|38s53
6R47|1|A|A|396R47|1|A|A|39n0BP
6R47|1|A|A|396R47|1|A|C|41s35
6R47|1|A|A|396R47|1|A|G|40s35
6R47|1|A|A|396R47|1|A|U|7cWW
6R47|1|A|A|396R47|1|A|U|8s55
6R47|1|A|C|136R47|1|A|C|130BPh
6R47|1|A|C|136R47|1|A|G|12s53
6R47|1|A|C|136R47|1|A|G|14s35
6R47|1|A|C|136R47|1|A|G|6cWW
6R47|1|A|C|166R47|1|A|A|20ncSW
6R47|1|A|C|166R47|1|A|C|160BPh
6R47|1|A|C|166R47|1|A|C|17s35
6R47|1|A|C|166R47|1|A|G|15s53
6R47|1|A|C|166R47|1|A|G|3cWW
6R47|1|A|C|176R47|1|A|A|18
6R47|1|A|C|176R47|1|A|C|16s53
6R47|1|A|C|176R47|1|A|C|170BPh
6R47|1|A|C|176R47|1|A|G|2cWW
6R47|1|A|C|176R47|1|A|G|3s55
6R47|1|A|C|236R47|1|A|A|22
6R47|1|A|C|236R47|1|A|C|230BPh
6R47|1|A|C|266R47|1|A|C|260BPh
6R47|1|A|C|266R47|1|A|C|27s35
6R47|1|A|C|266R47|1|B|A|66s55
6R47|1|A|C|266R47|1|B|G|65cWW
6R47|1|A|C|276R47|1|A|C|26s53
6R47|1|A|C|276R47|1|A|C|270BPh
6R47|1|A|C|276R47|1|A|C|28s35
6R47|1|A|C|276R47|1|B|G|64cWW
6R47|1|A|C|276R47|1|B|G|65s55
6R47|1|A|C|286R47|1|A|C|27s53
6R47|1|A|C|286R47|1|A|C|280BPh
6R47|1|A|C|286R47|1|A|U|29s35
6R47|1|A|C|286R47|1|B|G|63cWW
6R47|1|A|C|286R47|1|B|G|64s55
6R47|1|A|C|306R47|1|A|A|33n6BP
6R47|1|A|C|306R47|1|A|C|300BPh
6R47|1|A|C|306R47|1|A|U|29s53
6R47|1|A|C|306R47|1|B|U|62s55
6R47|1|A|C|346R47|1|A|C|340BPh
6R47|1|A|C|346R47|1|A|C|35ns35
6R47|1|A|C|346R47|1|A|G|12cWW
6R47|1|A|C|346R47|1|A|G|25s53
6R47|1|A|C|346R47|1|A|G|6s53
6R47|1|A|C|346R47|1|A|U|7n9BP
6R47|1|A|C|356R47|1|A|C|34ns53
6R47|1|A|C|356R47|1|A|C|350BPh
6R47|1|A|C|356R47|1|A|G|11cWW
6R47|1|A|C|356R47|1|A|G|12s55
6R47|1|A|C|46R47|1|A|A|20cSH
6R47|1|A|C|46R47|1|A|C|40BPh
6R47|1|A|C|46R47|1|A|C|5s35
6R47|1|A|C|46R47|1|A|G|15cWW
6R47|1|A|C|46R47|1|A|G|3s53
6R47|1|A|C|416R47|1|A|A|33ncWW
6R47|1|A|C|416R47|1|A|A|39s53
6R47|1|A|C|416R47|1|A|C|41n0BP
6R47|1|A|C|416R47|1|A|G|40ncHS
6R47|1|A|C|416R47|1|A|G|42s35
6R47|1|A|C|416R47|1|A|U|7ns55
6R47|1|A|C|466R47|1|A|C|460BPh
6R47|1|A|C|466R47|1|A|G|45s53
6R47|1|A|C|466R47|1|A|G|47s35
6R47|1|A|C|466R47|1|B|G|57cWW
6R47|1|A|C|56R47|1|A|A|21ncSH
6R47|1|A|C|56R47|1|A|C|4s53
6R47|1|A|C|56R47|1|A|C|50BPh
6R47|1|A|C|56R47|1|A|G|14cWW
6R47|1|A|C|56R47|1|A|G|15s55
6R47|1|A|C|56R47|1|A|G|6s35
6R47|1|A|C|506R47|1|A|C|51s35
6R47|1|A|C|506R47|1|A|U|49s53
6R47|1|A|C|506R47|1|B|G|53cWW
6R47|1|A|C|516R47|1|A|C|50s53
6R47|1|A|C|516R47|1|A|C|510BPh
6R47|1|A|C|516R47|1|B|G|52cWW
6R47|1|A|C|516R47|1|B|G|53s55
6R47|1|A|C|96R47|1|A|A|38ns55
6R47|1|A|C|96R47|1|A|C|90BPh
6R47|1|A|C|96R47|1|A|G|10s35
6R47|1|A|C|96R47|1|A|G|37cWW
6R47|1|A|C|96R47|1|A|U|8s53
6R47|1|A|G|106R47|1|A|C|9s53
6R47|1|A|G|106R47|1|A|G|100BPh
6R47|1|A|G|106R47|1|A|G|11s35
6R47|1|A|G|106R47|1|A|G|37s55
6R47|1|A|G|116R47|1|A|C|35cWW
6R47|1|A|G|116R47|1|A|G|10s53
6R47|1|A|G|116R47|1|A|G|11n0BP
6R47|1|A|G|116R47|1|A|G|12s35
6R47|1|A|G|126R47|1|A|C|13s35
6R47|1|A|G|126R47|1|A|C|34cWW
6R47|1|A|G|126R47|1|A|C|35s55
6R47|1|A|G|126R47|1|A|G|11s53
6R47|1|A|G|126R47|1|A|G|120BPh
6R47|1|A|G|146R47|1|A|A|24cSS
6R47|1|A|G|146R47|1|A|C|13s53
6R47|1|A|G|146R47|1|A|C|5cWW
6R47|1|A|G|146R47|1|A|G|140BPh
6R47|1|A|G|146R47|1|A|G|15s35
6R47|1|A|G|146R47|1|A|G|6s55
6R47|1|A|G|156R47|1|A|A|21cSW
6R47|1|A|G|156R47|1|A|C|16s35
6R47|1|A|G|156R47|1|A|C|4cWW
6R47|1|A|G|156R47|1|A|C|5s55
6R47|1|A|G|156R47|1|A|G|14s53
6R47|1|A|G|156R47|1|A|G|150BPh
6R47|1|A|G|26R47|1|A|C|17cWW
6R47|1|A|G|26R47|1|A|G|3s35
6R47|1|A|G|256R47|1|A|A|24s53
6R47|1|A|G|256R47|1|A|C|34s355BPh
6R47|1|A|G|256R47|1|A|G|250BPh
6R47|1|A|G|256R47|1|A|G|6tSS
6R47|1|A|G|36R47|1|A|C|16cWW
6R47|1|A|G|36R47|1|A|C|17s55
6R47|1|A|G|36R47|1|A|C|4s35
6R47|1|A|G|36R47|1|A|G|2s53
6R47|1|A|G|36R47|1|A|G|30BPh
6R47|1|A|G|326R47|1|A|A|31s53
6R47|1|A|G|326R47|1|A|G|320BPh
6R47|1|A|G|326R47|1|B|U|62ns35n1BP
6R47|1|A|G|376R47|1|A|A|38s35
6R47|1|A|G|376R47|1|A|C|9cWW
6R47|1|A|G|376R47|1|A|G|10s55
6R47|1|A|G|376R47|1|A|G|370BPh
6R47|1|A|G|406R47|1|A|A|39s53
6R47|1|A|G|406R47|1|A|C|41ncSH
6R47|1|A|G|406R47|1|A|G|400BPh
6R47|1|A|G|406R47|1|B|G|61s33
6R47|1|A|G|406R47|1|B|U|62n3BP
6R47|1|A|G|426R47|1|A|A|33s55
6R47|1|A|G|426R47|1|A|C|41s53
6R47|1|A|G|426R47|1|A|G|32
6R47|1|A|G|426R47|1|A|G|420BPh
6R47|1|A|G|426R47|1|A|U|43s35
6R47|1|A|G|426R47|1|B|G|61tHS
6R47|1|A|G|446R47|1|A|G|440BPh
6R47|1|A|G|446R47|1|A|G|45s35
6R47|1|A|G|446R47|1|A|U|43s53
6R47|1|A|G|446R47|1|B|C|59cWW
6R47|1|A|G|446R47|1|B|G|60s55
6R47|1|A|G|456R47|1|A|C|46s35
6R47|1|A|G|456R47|1|A|G|44s53
6R47|1|A|G|456R47|1|A|G|450BPh
6R47|1|A|G|456R47|1|B|C|58cWW
6R47|1|A|G|456R47|1|B|C|59s55
6R47|1|A|G|476R47|1|A|C|46s53
6R47|1|A|G|476R47|1|A|U|48s35
6R47|1|A|G|476R47|1|B|C|56cWW
6R47|1|A|G|476R47|1|B|G|57s55
6R47|1|A|G|66R47|1|A|C|13cWW
6R47|1|A|G|66R47|1|A|C|34s35
6R47|1|A|G|66R47|1|A|C|5s53
6R47|1|A|G|66R47|1|A|G|14s55
6R47|1|A|G|66R47|1|A|G|25tSS
6R47|1|A|G|66R47|1|A|G|60BPh
6R47|1|A|U|196R47|1|A|A|18s55
6R47|1|A|U|196R47|1|A|A|20s35
6R47|1|A|U|196R47|1|A|C|17
6R47|1|A|U|196R47|1|A|C|4
6R47|1|A|U|296R47|1|A|C|28s53
6R47|1|A|U|296R47|1|A|C|30s35
6R47|1|A|U|296R47|1|A|U|290BPh
6R47|1|A|U|296R47|1|B|G|63s55
6R47|1|A|U|296R47|1|B|U|62cWW
6R47|1|A|U|436R47|1|A|A|31ncSS
6R47|1|A|U|436R47|1|A|G|42s53
6R47|1|A|U|436R47|1|A|G|44s35
6R47|1|A|U|436R47|1|A|U|430BPh
6R47|1|A|U|486R47|1|A|G|47s53
6R47|1|A|U|486R47|1|A|U|480BPh
6R47|1|A|U|486R47|1|A|U|49s35
6R47|1|A|U|486R47|1|B|A|55cWW
6R47|1|A|U|496R47|1|A|C|50s35
6R47|1|A|U|496R47|1|A|U|48s53
6R47|1|A|U|496R47|1|A|U|490BPh
6R47|1|A|U|496R47|1|B|A|54cWW
6R47|1|A|U|496R47|1|B|A|55ns55
6R47|1|A|U|76R47|1|A|A|33s53
6R47|1|A|U|76R47|1|A|A|39cWW
6R47|1|A|U|76R47|1|A|C|41ns55
6R47|1|A|U|76R47|1|A|U|70BPh
6R47|1|A|U|76R47|1|A|U|8s35
6R47|1|A|U|86R47|1|A|A|38cWW
6R47|1|A|U|86R47|1|A|A|39s55
6R47|1|A|U|86R47|1|A|C|9s35
6R47|1|A|U|86R47|1|A|U|7s53
6R47|1|A|U|86R47|1|A|U|80BPh
6R47|1|B|A|546R47|1|A|U|49cWW
6R47|1|B|A|546R47|1|B|A|540BPh
6R47|1|B|A|546R47|1|B|A|55s35
6R47|1|B|A|546R47|1|B|G|53s53
6R47|1|B|A|556R47|1|A|U|48cWW
6R47|1|B|A|556R47|1|A|U|49ns55
6R47|1|B|A|556R47|1|B|A|54s53
6R47|1|B|A|556R47|1|B|A|550BPh
6R47|1|B|A|556R47|1|B|C|56s35
6R47|1|B|A|666R47|1|A|C|26s55
6R47|1|B|A|666R47|1|B|A|660BPh
6R47|1|B|A|666R47|1|B|G|65s53
6R47|1|B|C|566R47|1|A|G|47cWW
6R47|1|B|C|566R47|1|B|A|55s53
6R47|1|B|C|566R47|1|B|C|560BPh
6R47|1|B|C|566R47|1|B|G|57s35
6R47|1|B|C|586R47|1|A|G|45cWW
6R47|1|B|C|586R47|1|B|C|580BPh
6R47|1|B|C|586R47|1|B|C|59s35
6R47|1|B|C|586R47|1|B|G|57s53
6R47|1|B|C|596R47|1|A|G|44cWW
6R47|1|B|C|596R47|1|A|G|45s55
6R47|1|B|C|596R47|1|B|C|58s53
6R47|1|B|C|596R47|1|B|C|590BPh
6R47|1|B|C|596R47|1|B|G|60s35
6R47|1|B|G|526R47|1|A|C|51cWW
6R47|1|B|G|526R47|1|B|G|520BPh
6R47|1|B|G|526R47|1|B|G|53s35
6R47|1|B|G|536R47|1|A|C|50cWW
6R47|1|B|G|536R47|1|A|C|51s55
6R47|1|B|G|536R47|1|B|A|54s35
6R47|1|B|G|536R47|1|B|G|52s53
6R47|1|B|G|536R47|1|B|G|530BPh
6R47|1|B|G|576R47|1|A|C|46cWW
6R47|1|B|G|576R47|1|A|G|47s55
6R47|1|B|G|576R47|1|B|C|56s53
6R47|1|B|G|576R47|1|B|C|58s35
6R47|1|B|G|576R47|1|B|G|570BPh
6R47|1|B|G|606R47|1|A|G|44s55
6R47|1|B|G|606R47|1|B|C|59s53
6R47|1|B|G|606R47|1|B|G|600BPh
6R47|1|B|G|606R47|1|B|G|61s35
6R47|1|B|G|616R47|1|A|G|40s33
6R47|1|B|G|616R47|1|A|G|42tSH
6R47|1|B|G|616R47|1|B|G|60s53
6R47|1|B|G|616R47|1|B|G|610BPh
6R47|1|B|G|636R47|1|A|C|28cWW
6R47|1|B|G|636R47|1|A|U|29s55
6R47|1|B|G|636R47|1|B|G|630BPh
6R47|1|B|G|636R47|1|B|G|64s35
6R47|1|B|G|636R47|1|B|U|62s53
6R47|1|B|G|646R47|1|A|C|27cWW
6R47|1|B|G|646R47|1|A|C|28s55
6R47|1|B|G|646R47|1|B|G|63s53
6R47|1|B|G|646R47|1|B|G|640BPh
6R47|1|B|G|646R47|1|B|G|65s35
6R47|1|B|G|656R47|1|A|C|26cWW
6R47|1|B|G|656R47|1|A|C|27s55
6R47|1|B|G|656R47|1|B|A|66s35
6R47|1|B|G|656R47|1|B|G|64s53
6R47|1|B|G|656R47|1|B|G|650BPh
6R47|1|B|U|626R47|1|A|A|33n9BP
6R47|1|B|U|626R47|1|A|C|30s55
6R47|1|B|U|626R47|1|A|C|359BPh
6R47|1|B|U|626R47|1|A|G|32ns53
6R47|1|B|U|626R47|1|A|U|29cWW
6R47|1|B|U|626R47|1|B|G|63s35


Base-PairsCount (27)Relative Frequency
cWW220.815
cWS10.037
cHS10.037
tHS10.037
cSS10.037
tSS10.037
Base-PhosphateCount (55)Relative Frequency
5BPh10.018
9BPh10.018
0BPh530.964
Base-StackingCount (34)Relative Frequency
s3310.029
s53160.471
s55170.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)