A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
Search for released structures

NDB ID: 6VA2  PDB ID: 6VA2 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6VA2|1|A|C|16VA2|1|A|C|2s35
6VA2|1|A|C|16VA2|1|B|G|21cWW
6VA2|1|A|C|26VA2|1|A|C|1s53
6VA2|1|A|C|26VA2|1|A|G|3ns35
6VA2|1|A|C|26VA2|1|B|G|20cWW
6VA2|1|A|C|26VA2|1|B|G|21s55
6VA2|1|A|C|56VA2|1|A|C|50BPh
6VA2|1|A|C|56VA2|1|A|G|4s53
6VA2|1|A|C|56VA2|1|B|G|17cWW
6VA2|1|A|G|116VA2|1|A|G|110BPh
6VA2|1|A|G|116VA2|1|A|U|10s53
6VA2|1|A|G|116VA2|1|B|A|13s55
6VA2|1|A|G|116VA2|1|B|C|12cWW
6VA2|1|A|G|36VA2|1|A|C|2ns53
6VA2|1|A|G|36VA2|1|A|G|30BPh
6VA2|1|A|G|36VA2|1|A|G|4s35
6VA2|1|A|G|36VA2|1|B|C|19cWW
6VA2|1|A|G|36VA2|1|B|G|20s55
6VA2|1|A|G|46VA2|1|A|C|5s35
6VA2|1|A|G|46VA2|1|A|G|3s53
6VA2|1|A|G|46VA2|1|B|C|19s55
6VA2|1|A|G|46VA2|1|B|U|18cWW
6VA2|1|A|G|76VA2|1|A|U|8s35
6VA2|1|A|G|76VA2|1|B|C|16cWW
6VA2|1|A|G|96VA2|1|A|G|90BPh
6VA2|1|A|G|96VA2|1|A|U|10s35
6VA2|1|A|G|96VA2|1|A|U|8s53
6VA2|1|A|G|96VA2|1|B|A|15s55
6VA2|1|A|G|96VA2|1|B|C|14cWW
6VA2|1|A|U|106VA2|1|A|G|11s35
6VA2|1|A|U|106VA2|1|A|G|9s53
6VA2|1|A|U|106VA2|1|A|U|100BPh
6VA2|1|A|U|106VA2|1|B|A|13cWW
6VA2|1|A|U|86VA2|1|A|G|7s53
6VA2|1|A|U|86VA2|1|A|G|9s35
6VA2|1|A|U|86VA2|1|A|U|80BPh
6VA2|1|A|U|86VA2|1|B|A|15cWW
6VA2|1|B|A|136VA2|1|A|G|11s55
6VA2|1|B|A|136VA2|1|A|U|10cWW
6VA2|1|B|A|136VA2|1|B|C|12s53
6VA2|1|B|A|136VA2|1|B|C|14s35
6VA2|1|B|A|156VA2|1|A|G|9s55
6VA2|1|B|A|156VA2|1|A|U|8cWW
6VA2|1|B|A|156VA2|1|B|C|14s53
6VA2|1|B|A|156VA2|1|B|C|16s35
6VA2|1|B|C|126VA2|1|A|G|11cWW
6VA2|1|B|C|126VA2|1|B|A|13s35
6VA2|1|B|C|146VA2|1|A|G|9cWW
6VA2|1|B|C|146VA2|1|B|A|13s53
6VA2|1|B|C|146VA2|1|B|A|15s35
6VA2|1|B|C|146VA2|1|B|C|140BPh
6VA2|1|B|C|166VA2|1|A|G|7cWW
6VA2|1|B|C|166VA2|1|B|A|15s53
6VA2|1|B|C|166VA2|1|B|C|160BPh
6VA2|1|B|C|196VA2|1|A|G|3cWW
6VA2|1|B|C|196VA2|1|A|G|4s55
6VA2|1|B|C|196VA2|1|B|C|190BPh
6VA2|1|B|C|196VA2|1|B|G|20s35
6VA2|1|B|C|196VA2|1|B|U|18s53
6VA2|1|B|G|176VA2|1|A|C|5cWW
6VA2|1|B|G|176VA2|1|B|G|170BPh
6VA2|1|B|G|176VA2|1|B|U|18s35
6VA2|1|B|G|206VA2|1|A|C|2cWW
6VA2|1|B|G|206VA2|1|A|G|3s55
6VA2|1|B|G|206VA2|1|B|C|19s53
6VA2|1|B|G|206VA2|1|B|G|200BPh
6VA2|1|B|G|206VA2|1|B|G|21s35
6VA2|1|B|G|216VA2|1|A|C|1cWW
6VA2|1|B|G|216VA2|1|A|C|2s55
6VA2|1|B|G|216VA2|1|B|G|20s53
6VA2|1|B|G|216VA2|1|B|G|210BPh
6VA2|1|B|U|186VA2|1|A|G|4cWW
6VA2|1|B|U|186VA2|1|B|C|19s35
6VA2|1|B|U|186VA2|1|B|G|17s53
6VA2|1|B|U|186VA2|1|B|U|180BPh


Base-PairsCount (10)Relative Frequency
cWW101.000
Base-PhosphateCount (13)Relative Frequency
0BPh131.000
Base-StackingCount (11)Relative Frequency
s5360.545
s5550.455

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)