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As of 14-Apr-2021 number of released structures: 11277
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NDB ID: 6WBR  PDB ID: 6WBR 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6WBR|1|B|A|116WBR|1|B|A|110BPh
6WBR|1|B|A|116WBR|1|B|G|10s53
6WBR|1|B|A|116WBR|1|B|U|12s35
6WBR|1|B|A|196WBR|1|B|A|190BPh
6WBR|1|B|A|196WBR|1|B|U|18s53
6WBR|1|B|A|196WBR|1|B|U|20s35
6WBR|1|B|A|286WBR|1|B|A|280BPh
6WBR|1|B|A|286WBR|1|B|A|42s55
6WBR|1|B|A|286WBR|1|B|G|27ncHS
6WBR|1|B|A|286WBR|1|B|G|29s35
6WBR|1|B|A|286WBR|1|B|U|41cWW
6WBR|1|B|A|36WBR|1|B|A|30BPh
6WBR|1|B|A|36WBR|1|B|G|2s53
6WBR|1|B|A|36WBR|1|B|U|4s35
6WBR|1|B|A|346WBR|1|B|A|340BPh
6WBR|1|B|A|346WBR|1|B|A|35s35
6WBR|1|B|A|356WBR|1|B|A|34s53
6WBR|1|B|A|356WBR|1|B|A|350BPh
6WBR|1|B|A|366WBR|1|B|A|36n0BP
6WBR|1|B|A|366WBR|1|B|A|37
6WBR|1|B|A|376WBR|1|B|A|36
6WBR|1|B|A|376WBR|1|B|G|33s55
6WBR|1|B|A|376WBR|1|B|G|38s35
6WBR|1|B|A|376WBR|1|B|U|32cWW
6WBR|1|B|A|426WBR|1|B|A|28s55
6WBR|1|B|A|426WBR|1|B|A|420BPh
6WBR|1|B|A|426WBR|1|B|C|43s35
6WBR|1|B|A|426WBR|1|B|G|27ncWW
6WBR|1|B|A|426WBR|1|B|U|41s53
6WBR|1|B|A|466WBR|1|B|A|460BPh
6WBR|1|B|A|466WBR|1|B|G|24s55
6WBR|1|B|A|466WBR|1|B|G|47s35
6WBR|1|B|A|466WBR|1|B|U|23cWW
6WBR|1|B|A|466WBR|1|B|U|45s53
6WBR|1|B|A|496WBR|1|B|C|69s35
6WBR|1|B|A|496WBR|1|B|G|68tSS
6WBR|1|B|A|506WBR|1|B|A|500BPh
6WBR|1|B|A|506WBR|1|B|G|51ns35
6WBR|1|B|A|506WBR|1|B|G|68tHS
6WBR|1|B|A|526WBR|1|B|A|520BPh
6WBR|1|B|A|526WBR|1|B|C|53s35
6WBR|1|B|A|526WBR|1|B|C|67s55
6WBR|1|B|A|526WBR|1|B|G|51s53
6WBR|1|B|A|526WBR|1|B|U|66cWW
6WBR|1|B|A|706WBR|1|B|A|700BPh
6WBR|1|B|A|706WBR|1|B|U|71s35
6WBR|1|B|A|776WBR|1|B|A|770BPh
6WBR|1|B|A|776WBR|1|B|C|76ns53
6WBR|1|B|A|776WBR|1|B|C|78s35
6WBR|1|B|A|776WBR|1|B|U|92cWW
6WBR|1|B|A|86WBR|1|B|A|80BPh
6WBR|1|B|A|86WBR|1|B|A|9s35
6WBR|1|B|A|86WBR|1|B|C|7s53
6WBR|1|B|A|866WBR|1|B|A|86
6WBR|1|B|A|866WBR|1|B|C|82s33
6WBR|1|B|A|866WBR|1|B|G|87s35
6WBR|1|B|A|96WBR|1|B|A|8s53
6WBR|1|B|A|96WBR|1|B|A|90BPh
6WBR|1|B|A|96WBR|1|B|G|10s35
6WBR|1|B|C|136WBR|1|B|C|130BPh
6WBR|1|B|C|136WBR|1|B|C|14s35
6WBR|1|B|C|136WBR|1|B|U|12s53
6WBR|1|B|C|146WBR|1|B|C|13s53
6WBR|1|B|C|146WBR|1|B|C|140BPh
6WBR|1|B|C|146WBR|1|B|U|15s35
6WBR|1|B|C|226WBR|1|B|C|220BPh
6WBR|1|B|C|226WBR|1|B|G|21s53
6WBR|1|B|C|226WBR|1|B|G|47cWW
6WBR|1|B|C|226WBR|1|B|U|23s35
6WBR|1|B|C|306WBR|1|B|C|300BPh
6WBR|1|B|C|306WBR|1|B|C|31s35
6WBR|1|B|C|306WBR|1|B|G|29s53
6WBR|1|B|C|306WBR|1|B|G|39cWW
6WBR|1|B|C|316WBR|1|B|C|30s53
6WBR|1|B|C|316WBR|1|B|C|310BPh
6WBR|1|B|C|316WBR|1|B|G|38cWW
6WBR|1|B|C|316WBR|1|B|G|39ns55
6WBR|1|B|C|316WBR|1|B|U|32s35
6WBR|1|B|C|406WBR|1|B|C|40n0BP
6WBR|1|B|C|406WBR|1|B|G|29cWW
6WBR|1|B|C|406WBR|1|B|G|39s53
6WBR|1|B|C|406WBR|1|B|U|41s35
6WBR|1|B|C|436WBR|1|B|A|42s53
6WBR|1|B|C|436WBR|1|B|C|430BPh
6WBR|1|B|C|436WBR|1|B|C|44ns35
6WBR|1|B|C|436WBR|1|B|G|26cWW
6WBR|1|B|C|446WBR|1|B|C|43ns53
6WBR|1|B|C|446WBR|1|B|C|440BPh
6WBR|1|B|C|446WBR|1|B|G|25cWW
6WBR|1|B|C|446WBR|1|B|G|26s55
6WBR|1|B|C|446WBR|1|B|U|45s35
6WBR|1|B|C|486WBR|1|B|C|480BPh
6WBR|1|B|C|486WBR|1|B|G|21cWW
6WBR|1|B|C|486WBR|1|B|G|47s53
6WBR|1|B|C|536WBR|1|B|A|52s53
6WBR|1|B|C|536WBR|1|B|C|53n0BP
6WBR|1|B|C|536WBR|1|B|C|54s35
6WBR|1|B|C|536WBR|1|B|G|65cWW
6WBR|1|B|C|546WBR|1|B|C|53s53
6WBR|1|B|C|546WBR|1|B|C|540BPh
6WBR|1|B|C|546WBR|1|B|C|55s35
6WBR|1|B|C|546WBR|1|B|G|64cWW
6WBR|1|B|C|546WBR|1|B|G|65s55
6WBR|1|B|C|556WBR|1|B|C|54s53
6WBR|1|B|C|556WBR|1|B|C|550BPh
6WBR|1|B|C|556WBR|1|B|C|56s35
6WBR|1|B|C|556WBR|1|B|G|63cWW
6WBR|1|B|C|556WBR|1|B|G|64s55
6WBR|1|B|C|566WBR|1|B|C|55s53
6WBR|1|B|C|566WBR|1|B|C|560BPh
6WBR|1|B|C|566WBR|1|B|G|62cWW
6WBR|1|B|C|566WBR|1|B|U|57ns35
6WBR|1|B|C|596WBR|1|B|U|57
6WBR|1|B|C|676WBR|1|B|A|52s55
6WBR|1|B|C|676WBR|1|B|C|670BPh
6WBR|1|B|C|676WBR|1|B|G|51cWW
6WBR|1|B|C|676WBR|1|B|G|68ns35
6WBR|1|B|C|676WBR|1|B|U|66s53
6WBR|1|B|C|696WBR|1|B|A|49s53
6WBR|1|B|C|696WBR|1|B|C|690BPh
6WBR|1|B|C|76WBR|1|B|A|8s35
6WBR|1|B|C|76WBR|1|B|C|70BPh
6WBR|1|B|C|76WBR|1|B|G|6s53
6WBR|1|B|C|736WBR|1|B|U|927BPh
6WBR|1|B|C|766WBR|1|B|A|77ns35
6WBR|1|B|C|766WBR|1|B|C|760BPh
6WBR|1|B|C|766WBR|1|B|U|75s53
6WBR|1|B|C|786WBR|1|B|A|77s53
6WBR|1|B|C|786WBR|1|B|C|780BPh
6WBR|1|B|C|786WBR|1|B|C|79s35
6WBR|1|B|C|786WBR|1|B|G|91cWW
6WBR|1|B|C|796WBR|1|B|C|78s53
6WBR|1|B|C|796WBR|1|B|C|790BPh
6WBR|1|B|C|796WBR|1|B|C|80s35
6WBR|1|B|C|796WBR|1|B|G|90cWW
6WBR|1|B|C|796WBR|1|B|G|91s55
6WBR|1|B|C|806WBR|1|B|C|79s53
6WBR|1|B|C|806WBR|1|B|C|81s35
6WBR|1|B|C|806WBR|1|B|G|89cWW
6WBR|1|B|C|806WBR|1|B|G|90s55
6WBR|1|B|C|816WBR|1|B|C|80s53
6WBR|1|B|C|816WBR|1|B|C|81n0BP
6WBR|1|B|C|816WBR|1|B|C|82ns35
6WBR|1|B|C|816WBR|1|B|G|88cWW
6WBR|1|B|C|816WBR|1|B|G|89s55
6WBR|1|B|C|826WBR|1|B|A|86s33
6WBR|1|B|C|826WBR|1|B|C|81ns53
6WBR|1|B|C|826WBR|1|B|C|82n0BP
6WBR|1|B|C|826WBR|1|B|G|87cWW
6WBR|1|B|C|946WBR|1|B|C|94n0BP
6WBR|1|B|C|946WBR|1|B|U|938BPh
6WBR|1|B|G|106WBR|1|B|A|11s35
6WBR|1|B|G|106WBR|1|B|A|9s53
6WBR|1|B|G|106WBR|1|B|G|100BPh
6WBR|1|B|G|166WBR|1|B|G|160BPh
6WBR|1|B|G|166WBR|1|B|G|17s35
6WBR|1|B|G|166WBR|1|B|U|15s53
6WBR|1|B|G|176WBR|1|B|G|16s53
6WBR|1|B|G|176WBR|1|B|U|18s35
6WBR|1|B|G|26WBR|1|B|A|3s35
6WBR|1|B|G|26WBR|1|B|G|20BPh
6WBR|1|B|G|216WBR|1|B|C|22s35
6WBR|1|B|G|216WBR|1|B|C|48cWW
6WBR|1|B|G|216WBR|1|B|G|210BPh
6WBR|1|B|G|216WBR|1|B|U|20s53
6WBR|1|B|G|246WBR|1|B|A|46s55
6WBR|1|B|G|246WBR|1|B|G|240BPh
6WBR|1|B|G|246WBR|1|B|G|25s35
6WBR|1|B|G|246WBR|1|B|U|23s53
6WBR|1|B|G|246WBR|1|B|U|45cWW
6WBR|1|B|G|256WBR|1|B|C|44cWW
6WBR|1|B|G|256WBR|1|B|G|24s53
6WBR|1|B|G|256WBR|1|B|G|250BPh
6WBR|1|B|G|256WBR|1|B|G|26s35
6WBR|1|B|G|256WBR|1|B|U|45s55
6WBR|1|B|G|266WBR|1|B|C|43cWW
6WBR|1|B|G|266WBR|1|B|C|44s55
6WBR|1|B|G|266WBR|1|B|G|25s53
6WBR|1|B|G|266WBR|1|B|G|27s35
6WBR|1|B|G|276WBR|1|B|A|28ncSH
6WBR|1|B|G|276WBR|1|B|A|42ncWW
6WBR|1|B|G|276WBR|1|B|G|26s53
6WBR|1|B|G|276WBR|1|B|G|270BPh
6WBR|1|B|G|296WBR|1|B|A|28s53
6WBR|1|B|G|296WBR|1|B|C|30s35
6WBR|1|B|G|296WBR|1|B|C|40cWW
6WBR|1|B|G|296WBR|1|B|G|290BPh
6WBR|1|B|G|296WBR|1|B|U|41s55
6WBR|1|B|G|336WBR|1|B|A|37s55
6WBR|1|B|G|336WBR|1|B|U|32s53
6WBR|1|B|G|386WBR|1|B|A|37s53
6WBR|1|B|G|386WBR|1|B|C|31cWW
6WBR|1|B|G|386WBR|1|B|G|38n0BP
6WBR|1|B|G|386WBR|1|B|G|39s35
6WBR|1|B|G|386WBR|1|B|U|32ns55
6WBR|1|B|G|396WBR|1|B|C|30cWW
6WBR|1|B|G|396WBR|1|B|C|31ns55
6WBR|1|B|G|396WBR|1|B|C|40s35
6WBR|1|B|G|396WBR|1|B|G|38s53
6WBR|1|B|G|396WBR|1|B|G|390BPh
6WBR|1|B|G|476WBR|1|B|A|46s53
6WBR|1|B|G|476WBR|1|B|C|22cWW
6WBR|1|B|G|476WBR|1|B|C|48s35
6WBR|1|B|G|476WBR|1|B|G|470BPh
6WBR|1|B|G|476WBR|1|B|U|23s55
6WBR|1|B|G|56WBR|1|B|G|50BPh
6WBR|1|B|G|56WBR|1|B|G|6s35
6WBR|1|B|G|56WBR|1|B|U|4s53
6WBR|1|B|G|516WBR|1|B|A|50ns53
6WBR|1|B|G|516WBR|1|B|A|52s35
6WBR|1|B|G|516WBR|1|B|C|67cWW
6WBR|1|B|G|516WBR|1|B|G|510BPh
6WBR|1|B|G|516WBR|1|B|G|68s55
6WBR|1|B|G|66WBR|1|B|C|7s35
6WBR|1|B|G|66WBR|1|B|G|5s53
6WBR|1|B|G|66WBR|1|B|G|60BPh
6WBR|1|B|G|606WBR|1|B|G|62s55
6WBR|1|B|G|606WBR|1|B|U|61n1BP
6WBR|1|B|G|626WBR|1|B|C|56cWW
6WBR|1|B|G|626WBR|1|B|G|60s55
6WBR|1|B|G|626WBR|1|B|G|62n0BP
6WBR|1|B|G|626WBR|1|B|G|63s35
6WBR|1|B|G|636WBR|1|B|C|55cWW
6WBR|1|B|G|636WBR|1|B|G|62s53
6WBR|1|B|G|636WBR|1|B|G|64s35
6WBR|1|B|G|646WBR|1|B|C|54cWW
6WBR|1|B|G|646WBR|1|B|C|55s55
6WBR|1|B|G|646WBR|1|B|G|63s53
6WBR|1|B|G|646WBR|1|B|G|640BPh
6WBR|1|B|G|646WBR|1|B|G|65s35
6WBR|1|B|G|656WBR|1|B|C|53cWW
6WBR|1|B|G|656WBR|1|B|C|54s55
6WBR|1|B|G|656WBR|1|B|G|64s53
6WBR|1|B|G|656WBR|1|B|G|650BPh
6WBR|1|B|G|656WBR|1|B|U|66s35
6WBR|1|B|G|686WBR|1|B|A|49tSS
6WBR|1|B|G|686WBR|1|B|A|50tSH3BPh
6WBR|1|B|G|686WBR|1|B|C|67ns53
6WBR|1|B|G|686WBR|1|B|G|51s55
6WBR|1|B|G|686WBR|1|B|G|680BPh
6WBR|1|B|G|876WBR|1|B|A|86s53
6WBR|1|B|G|876WBR|1|B|C|82cWW
6WBR|1|B|G|876WBR|1|B|G|87n0BP
6WBR|1|B|G|876WBR|1|B|G|88s35
6WBR|1|B|G|886WBR|1|B|C|81cWW
6WBR|1|B|G|886WBR|1|B|G|87s53
6WBR|1|B|G|886WBR|1|B|G|880BPh
6WBR|1|B|G|886WBR|1|B|G|89s35
6WBR|1|B|G|896WBR|1|B|C|80cWW
6WBR|1|B|G|896WBR|1|B|C|81s55
6WBR|1|B|G|896WBR|1|B|G|88s53
6WBR|1|B|G|896WBR|1|B|G|890BPh
6WBR|1|B|G|896WBR|1|B|G|90s35
6WBR|1|B|G|906WBR|1|B|C|79cWW
6WBR|1|B|G|906WBR|1|B|C|80s55
6WBR|1|B|G|906WBR|1|B|G|89s53
6WBR|1|B|G|906WBR|1|B|G|91s35
6WBR|1|B|G|916WBR|1|B|C|78cWW
6WBR|1|B|G|916WBR|1|B|C|79s55
6WBR|1|B|G|916WBR|1|B|G|90s53
6WBR|1|B|G|916WBR|1|B|G|910BPh
6WBR|1|B|G|916WBR|1|B|U|92s35
6WBR|1|B|U|126WBR|1|B|A|11s53
6WBR|1|B|U|126WBR|1|B|C|13s35
6WBR|1|B|U|126WBR|1|B|U|120BPh
6WBR|1|B|U|156WBR|1|B|C|14s53
6WBR|1|B|U|156WBR|1|B|G|16s35
6WBR|1|B|U|156WBR|1|B|U|150BPh
6WBR|1|B|U|186WBR|1|B|A|19s35
6WBR|1|B|U|186WBR|1|B|G|17s53
6WBR|1|B|U|186WBR|1|B|U|180BPh
6WBR|1|B|U|206WBR|1|B|A|19s53
6WBR|1|B|U|206WBR|1|B|G|21s35
6WBR|1|B|U|206WBR|1|B|U|200BPh
6WBR|1|B|U|236WBR|1|B|A|46cWW
6WBR|1|B|U|236WBR|1|B|C|22s53
6WBR|1|B|U|236WBR|1|B|G|24s35
6WBR|1|B|U|236WBR|1|B|G|47s55
6WBR|1|B|U|236WBR|1|B|U|230BPh
6WBR|1|B|U|326WBR|1|B|A|37cWW
6WBR|1|B|U|326WBR|1|B|C|31s53
6WBR|1|B|U|326WBR|1|B|G|33s35
6WBR|1|B|U|326WBR|1|B|G|38ns55
6WBR|1|B|U|326WBR|1|B|U|320BPh
6WBR|1|B|U|46WBR|1|B|A|3s53
6WBR|1|B|U|46WBR|1|B|G|5s35
6WBR|1|B|U|46WBR|1|B|U|40BPh
6WBR|1|B|U|416WBR|1|B|A|28cWW
6WBR|1|B|U|416WBR|1|B|A|42s35
6WBR|1|B|U|416WBR|1|B|C|40s53
6WBR|1|B|U|416WBR|1|B|G|29s55
6WBR|1|B|U|416WBR|1|B|U|410BPh
6WBR|1|B|U|456WBR|1|B|A|46s35
6WBR|1|B|U|456WBR|1|B|C|44s53
6WBR|1|B|U|456WBR|1|B|G|24cWW
6WBR|1|B|U|456WBR|1|B|G|25s55
6WBR|1|B|U|456WBR|1|B|U|450BPh
6WBR|1|B|U|576WBR|1|B|C|56ns53
6WBR|1|B|U|576WBR|1|B|C|59
6WBR|1|B|U|586WBR|1|B|U|57
6WBR|1|B|U|586WBR|1|B|U|580BPh
6WBR|1|B|U|666WBR|1|B|A|52cWW
6WBR|1|B|U|666WBR|1|B|C|67s35
6WBR|1|B|U|666WBR|1|B|G|65s53
6WBR|1|B|U|666WBR|1|B|U|660BPh
6WBR|1|B|U|716WBR|1|B|A|70s53
6WBR|1|B|U|716WBR|1|B|U|710BPh
6WBR|1|B|U|726WBR|1|B|U|72n0BP
6WBR|1|B|U|746WBR|1|B|U|74n0BP
6WBR|1|B|U|746WBR|1|B|U|75s35
6WBR|1|B|U|756WBR|1|B|C|76s35
6WBR|1|B|U|756WBR|1|B|U|74s539BPh
6WBR|1|B|U|756WBR|1|B|U|750BPh
6WBR|1|B|U|926WBR|1|B|A|77cWW
6WBR|1|B|U|926WBR|1|B|G|91s53
6WBR|1|B|U|926WBR|1|B|U|920BPh
6WBR|1|B|U|936WBR|1|B|U|92
6WBR|1|B|U|936WBR|1|B|U|930BPh


Base-PairsCount (25)Relative Frequency
cWW230.920
tHS10.040
tSS10.040
Base-PhosphateCount (69)Relative Frequency
3BPh10.014
7BPh10.014
8BPh10.014
9BPh10.014
0BPh650.942
Base-StackingCount (36)Relative Frequency
s3310.028
s53200.556
s55150.417

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)