7B4Z: Base Pair Morphology Parameters

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As of 3-Mar-2021 number of released structures: 11234

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NDB ID: 7B4Z PDB ID: 7B4Z

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_DA2:DT19_B	0.116	-0.021	-0.04	4.47	-12.716	-0.579
1	1	A_DC1:DG20_B	0.253	-0.093	0.269	5.509	-9.147	-1.484
1	3	A_DC3:DG18_B	0.478	-0.143	0.077	2.427	-9.444	-0.091
1	5	A_DC5:DG16_B	0.321	-0.068	0.317	-12.623	-4.136	-0.707
1	6	A_DC6:DG15_B	0.246	-0.088	0.137	-6.42	-1.314	0.508
1	8	A_DC8:DG13_B	0.514	-0.151	0.158	-1.097	-4.031	-0.318
1	4	A_DG4:DC17_B	-0.37	-0.113	-0.062	-10.418	-11.692	-0.298
1	7	A_DG7:DC14_B	-0.397	-0.116	0.118	3.03	-2.389	-0.7
1	10	A_DG10:DC11_B	-0.279	-0.086	0.177	-6.676	-8.663	-1.008
1	9	A_DT9:DA12_B	-0.059	-0.031	-0.121	-2.41	-12.101	0.256

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.