7B4Z: Base Pair Morphology Step Parameters

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NDB ID: 7B4Z PDB ID: 7B4Z

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_DA2DC3:DG18DT19_BB	0.367	-0.836	3.336	-1.333	1.594	35.194	-1.619	-0.806	3.281	2.633	2.202	35.253
1	1	AA_DC1DA2:DT19DG20_BB	-0.495	-0.907	3.216	1.736	9.271	30.603	-3.222	1.194	2.797	17.063	-3.195	31.99
1	3	AA_DC3DG4:DC17DG18_BB	0.302	-1.184	3.412	3.435	9.966	31.714	-3.708	0.042	2.932	17.638	-6.079	33.377
1	5	AA_DC5DC6:DG15DG16_BB	0.99	0.1	3.164	3.825	0.392	36.743	0.106	-1.056	3.248	0.62	-6.047	36.937
1	6	AA_DC6DG7:DC14DG15_BB	-0.67	-1.05	3.01	-0.692	4.029	24.708	-3.496	1.362	2.823	9.335	1.602	25.039
1	8	AA_DC8DT9:DA12DG13_BB	-0.12	-1.282	3.248	3.448	2.398	30.562	-2.866	0.88	3.109	4.523	-6.503	30.843
1	4	AA_DG4DC5:DG16DC17_BB	-0.376	-0.857	3.356	-2.568	1.325	39.0	-1.444	0.245	3.343	1.982	3.84	39.103
1	7	AA_DG7DC8:DG13DC14_BB	-0.037	-1.03	3.429	-0.963	1.585	40.68	-1.663	-0.057	3.388	2.278	1.384	40.721
1	9	AA_DT9DG10:DC11DA12_BB	0.365	-1.067	3.3	-1.588	9.868	30.011	-3.71	-0.952	2.795	18.425	2.964	31.596

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.