7BFX: Base Pair Morphology Parameters

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As of 14-Apr-2021 number of released structures: 11277

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NDB ID: 7BFX PDB ID: 7BFX

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_DA1:DT20_A	-0.506	-0.132	-0.17	-2.428	-2.679	5.273
1	4	A_DA4:DT17_A	0.352	-0.191	0.743	2.771	-15.495	2.602
1	5	A_DA5:DT16_A	0.282	0.034	0.327	-8.081	2.541	4.819
1	3	A_DC3:DG18_A	0.408	-0.249	0.374	7.761	-31.398	-2.66
1	7	A_DC7:DG14_A	-0.094	-0.091	-0.407	-5.227	-14.195	4.799
1	8	A_DC8:DG13_A	-0.606	0.036	0.14	15.502	1.486	0.33
1	2	A_DG2:DC19_A	0.614	-0.147	0.477	-0.063	-18.071	-0.053
1	6	A_DT6:DA15_A	-0.164	0.015	0.228	-13.878	-9.291	-0.342

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.