7D7V: Base Pair Morphology Parameters

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As of 3-Mar-2021 number of released structures: 11234

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NDB ID: 7D7V PDB ID: 7D7V

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_A6:U53_A	-0.058	0.072	0.163	-4.53	-3.976	-2.76
1	2	A_C3:G56_A	-0.289	-0.079	-0.037	-0.768	-11.685	3.104
1	4	A_C5:G54_A	-0.025	-0.229	0.189	-2.922	-21.001	2.513
1	19	A_C12:G45_A	0.164	0.225	-0.724	17.158	-11.32	0.325
1	20	A_C13:G43_A	0.067	-0.105	0.145	3.716	-17.794	1.371
1	7	A_C16:G51_A	-0.207	-0.176	-0.109	2.155	-7.5	2.013
1	8	A_C17:G50_A	0.246	-0.382	-0.073	1.17	-5.136	1.25
1	16	A_C25:G40_A	0.275	-0.134	0.071	6.919	-14.56	3.843
1	18	A_C27:G38_A	0.422	-0.172	-0.012	-1.614	-1.866	2.066
1	1	A_G2:C57_A	-0.696	-0.232	-0.021	2.788	-13.286	0.104
1	3	A_G4:C55_A	-0.396	0.041	0.115	-7.103	-11.715	3.259
1	6	A_G15:C52_A	-0.708	-0.021	-0.4	-6.441	-11.082	8.984
1	9	A_G18:C49_A	0.008	-0.007	-0.011	-1.709	-13.846	3.74
1	10	A_G19:C48_A	-0.032	-0.16	0.152	-8.156	-15.843	4.443
1	13	A_G22:U44_A	-2.076	-0.713	-0.182	7.645	-7.269	4.815
1	14	A_G23:A42_A	-0.012	1.686	-0.309	-2.547	2.616	-15.536
1	15	A_G24:C41_A	0.154	-0.129	0.574	7.816	-7.358	-0.564
1	17	A_G26:C39_A	-0.042	-0.062	-0.055	-5.503	-10.463	4.322
1	11	A_U20:A47_A	-0.001	0.061	0.297	-1.095	-15.525	5.587
1	12	A_U21:A46_A	-0.428	0.019	0.329	7.36	-4.963	8.939

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.