A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 3-Mar-2021 number of released structures: 11234
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NDB ID: 7D7V  PDB ID: 7D7V 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_A6:U53_A-0.0580.0720.163-4.53-3.976-2.76
12A_C3:G56_A-0.289-0.079-0.037-0.768-11.6853.104
14A_C5:G54_A-0.025-0.2290.189-2.922-21.0012.513
119A_C12:G45_A0.1640.225-0.72417.158-11.320.325
120A_C13:G43_A0.067-0.1050.1453.716-17.7941.371
17A_C16:G51_A-0.207-0.176-0.1092.155-7.52.013
18A_C17:G50_A0.246-0.382-0.0731.17-5.1361.25
116A_C25:G40_A0.275-0.1340.0716.919-14.563.843
118A_C27:G38_A0.422-0.172-0.012-1.614-1.8662.066
11A_G2:C57_A-0.696-0.232-0.0212.788-13.2860.104
13A_G4:C55_A-0.3960.0410.115-7.103-11.7153.259
16A_G15:C52_A-0.708-0.021-0.4-6.441-11.0828.984
19A_G18:C49_A0.008-0.007-0.011-1.709-13.8463.74
110A_G19:C48_A-0.032-0.160.152-8.156-15.8434.443
113A_G22:U44_A-2.076-0.713-0.1827.645-7.2694.815
114A_G23:A42_A-0.0121.686-0.309-2.5472.616-15.536
115A_G24:C41_A0.154-0.1290.5747.816-7.358-0.564
117A_G26:C39_A-0.042-0.062-0.055-5.503-10.4634.322
111A_U20:A47_A-0.0010.0610.297-1.095-15.5255.587
112A_U21:A46_A-0.4280.0190.3297.36-4.9638.939

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.