7D7V: Base Pair Morphology Step Parameters

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NDB ID: 7D7V PDB ID: 7D7V

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	AA_A6G15:C52U53_AA	0.718	-2.142	3.359	4.699	5.158	30.138	-5.008	-0.445	3.034	9.757	-8.887	30.917
1	2	AA_C3G4:C55G56_AA	0.222	-1.637	3.244	-0.113	10.727	29.765	-4.812	-0.426	2.516	20.079	0.211	31.598
1	4	AA_C5A6:U53G54_AA	-0.928	-1.28	3.061	-0.376	16.207	36.319	-3.517	1.329	2.315	24.553	0.57	39.661
1	18	AA_C12C13:G43G45_AA	1.692	-1.46	3.318	-2.682	13.248	48.44	-2.626	-2.178	2.762	15.792	3.197	50.181
1	7	AA_C16C17:G50G51_AA	-0.792	-1.721	3.315	-0.742	9.728	27.727	-5.342	1.414	2.594	19.548	1.49	29.362
1	8	AA_C17G18:C49G50_AA	0.773	-1.917	3.336	-0.4	10.584	31.119	-5.073	-1.432	2.555	19.049	0.72	32.83
1	16	AA_C25G26:C39G40_AA	0.2	-1.783	3.421	0.208	6.934	30.518	-4.602	-0.333	2.955	12.964	-0.389	31.278
1	1	AA_G2C3:G56C57_AA	0.352	-1.456	3.352	-0.468	9.333	34.668	-3.66	-0.637	2.872	15.32	0.768	35.868
1	3	AA_G4C5:G54C55_AA	0.87	-2.134	3.101	3.953	4.579	31.063	-4.692	-0.925	2.851	8.449	-7.295	31.633
1	6	AA_G15C16:G51C52_AA	-0.809	-1.88	3.097	-4.159	-0.947	33.356	-3.1	0.739	3.222	-1.641	7.209	33.619
1	9	AA_G18G19:C48C49_AA	0.708	-1.998	3.186	1.158	9.257	33.465	-4.624	-1.028	2.581	15.7	-1.964	34.706
1	10	AA_G19U20:A47C48_AA	-0.967	-2.046	2.972	-4.02	1.895	26.231	-4.898	1.143	2.932	4.138	8.778	26.599
1	13	AA_G22G23:A42U44_AA	-0.513	-3.119	3.515	-2.761	4.6	44.989	-4.473	0.412	3.222	5.987	3.592	45.291
1	14	AA_G23G24:C41A42_AA	0.636	-1.753	2.904	-8.824	11.328	29.966	-4.54	-2.259	1.88	20.494	15.963	33.158
1	15	AA_G24C25:G40C41_AA	0.271	-1.54	3.284	3.379	4.314	35.602	-3.093	0.032	3.094	7.004	-5.486	36.008
1	17	AA_G26C27:G38C39_AA	-0.279	-1.838	3.278	-0.719	0.293	32.988	-3.286	0.369	3.267	0.517	1.266	32.996
1	11	AA_U20U21:A46A47_AA	0.204	-1.085	3.0	-2.782	3.74	31.375	-2.603	-0.832	2.826	6.869	5.108	31.71
1	12	AA_U21G22:U44A46_AA	1.545	-0.615	3.136	-1.469	12.906	35.819	-2.456	-2.543	2.7	20.184	2.298	38.029

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.