A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 3-Mar-2021 number of released structures: 11234
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NDB ID: 7D7W  PDB ID: 7D7W 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_A7:U46_A0.028-0.0840.2253.587-10.323-3.601
19A_A18:U43_A0.2110.0070.096-2.089-8.883.363
117A_A26:U33_A0.17-0.1140.0867.387-22.2732.243
12A_C3:G50_A-0.35-0.3080.344-0.841-13.911-2.392
15A_C6:G47_A0.008-0.0880.04810.209-21.872-0.559
120A_C13:G38_A0.226-0.182-0.08210.046-5.207-0.164
121A_C14:G36_A0.395-0.105-0.11-0.105-5.4211.061
118A_C27:G32_A0.366-0.11-0.0946.86-11.8114.107
11A_G2:C51_A-0.714-0.360.4030.168-14.1714.428
17A_G16:C45_A0.041-0.185-0.115-16.875-20.0120.768
110A_G19:C42_A-0.279-0.298-0.002-1.696-11.8124.102
111A_G20:C41_A-0.691-0.2610.075-10.485-18.3580.25
113A_G22:C39_A-0.118-0.1560.1793.143-1.654-0.187
114A_G23:C37_A-0.3350.1440.2844.629-2.1871.817
115A_G24:A35_A-0.4541.869-0.197-0.896-11.537-17.664
116A_G25:C34_A-0.437-0.1860.4243.474-16.221-2.357
119A_G28:A31_A7.013-5.0540.40819.714-2.788-17.104
13A_U4:A49_A-0.426-0.1190.245-5.429-16.8280.948
14A_U5:G48_A2.133-0.4740.2534.74-12.401-1.206
18A_U17:A44_A-0.362-0.2140.243-13.548-12.525-0.731
112A_U21:A40_A0.509-0.2620.085-0.433-18.7265.418

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.