7D7W: Base Pair Morphology Step Parameters

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NDB ID: 7D7W PDB ID: 7D7W

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	AA_A7G16:C45U46_AA	0.516	-2.459	3.695	5.798	11.462	34.579	-5.496	-0.007	2.814	18.511	-9.364	36.819
1	9	AA_A18G19:C42U43_AA	0.563	-1.635	3.251	1.249	5.385	25.955	-4.911	-0.915	2.882	11.818	-2.741	26.527
1	17	AA_A26C27:G32U33_AA	0.508	-1.273	3.34	1.352	3.754	33.995	-2.757	-0.65	3.202	6.393	-2.302	34.222
1	2	AA_C3U4:A49G50_AA	-0.036	-1.481	3.376	-0.777	5.488	32.031	-3.602	-0.071	3.086	9.854	1.394	32.495
1	5	AA_C6A7:U46G47_AA	-0.889	-1.194	3.246	-2.182	15.695	37.539	-3.348	1.053	2.61	23.167	3.22	40.636
1	19	AA_C13C14:G36G38_AA	2.095	-1.569	3.412	2.308	5.01	51.963	-2.126	-2.221	3.342	5.7	-2.625	52.235
1	18	AA_C27G28:A31G32_AA	-2.506	-0.89	3.087	-2.364	7.639	48.672	-1.604	2.838	3.034	9.197	2.846	49.285
1	1	AA_G2C3:G50C51_AA	-0.741	-1.722	3.175	-2.286	3.006	33.685	-3.416	0.921	3.057	5.167	3.929	33.89
1	7	AA_G16U17:A44C45_AA	-0.724	-1.852	3.153	-3.065	0.966	30.743	-3.656	0.784	3.15	1.815	5.762	30.906
1	10	AA_G19G20:C41C42_AA	0.428	-2.121	3.348	2.325	6.722	29.962	-5.256	-0.371	2.841	12.776	-4.418	30.776
1	11	AA_G20U21:A40C41_AA	-0.206	-1.411	3.112	-0.407	3.526	33.342	-2.986	0.295	2.953	6.124	0.708	33.525
1	13	AA_G22G23:C37C39_AA	2.347	-1.431	3.094	1.558	5.584	42.449	-2.478	-3.069	2.972	7.669	-2.14	42.825
1	14	AA_G23G24:A35C37_AA	-0.543	-4.284	3.283	1.336	3.714	25.683	-10.457	1.541	2.616	8.293	-2.983	25.98
1	15	AA_G24G25:C34A35_AA	0.537	-1.279	3.091	-9.139	6.403	33.586	-2.949	-2.087	2.583	10.719	15.3	35.34
1	16	AA_G25A26:U33C34_AA	0.144	-0.879	3.238	1.512	0.869	39.216	-1.411	-0.037	3.222	1.294	-2.252	39.253
1	3	AA_U4U5:G48A49_AA	-0.035	-0.938	3.021	-0.272	1.209	42.567	-1.403	0.023	2.995	1.665	0.374	42.584
1	4	AA_U5C6:G47G48_AA	0.114	-2.605	2.761	2.806	8.683	18.913	-9.639	0.491	1.439	24.65	-7.966	20.981
1	8	AA_U17A18:U43A44_AA	0.323	-1.255	2.969	1.976	6.713	33.18	-3.096	-0.277	2.686	11.595	-3.413	33.889
1	12	AA_U21G22:C39A40_AA	-0.099	-1.45	3.057	-1.21	8.805	28.754	-4.367	-0.025	2.514	17.218	2.367	30.068

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.