7EI9: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231

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NDB ID: 7EI9 PDB ID: 7EI9

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_A8:G15_B	-6.696	-5.119	0.695	-20.467	0.444	-14.302
1	6	A_A9:G14_B	-7.318	-4.61	-0.132	4.711	-5.503	0.924
1	13	A_A16:G7_B	-6.895	-4.538	0.464	-11.314	25.001	8.097
1	3	A_C3:G17_B	0.659	-0.139	-0.107	2.985	3.907	0.99
1	7	A_C10:G13_B	-0.399	0.125	-0.176	12.185	-5.971	2.311
1	8	A_C11:G12_B	-0.355	-0.322	0.006	9.719	0.718	-1.173
1	15	A_C18:G2_B	-0.233	0.079	-0.411	4.505	-3.964	6.965
1	16	A_C19:G1_B	-0.067	0.097	-0.229	7.876	-4.247	3.318
1	1	A_G1:C19_B	0.23	-0.174	-0.337	-6.499	-5.622	-2.994
1	2	A_G2:C18_B	-0.233	-0.124	-0.446	-0.875	-5.533	2.555
1	4	A_G7:A16_B	6.974	-3.813	0.751	22.992	18.143	5.91
1	9	A_G12:C11_B	-0.125	-0.332	-0.391	-2.23	-6.109	-1.003
1	10	A_G13:C10_B	-0.229	-0.166	0.146	-7.842	-5.499	6.094
1	11	A_G14:A9_B	7.506	-3.691	0.133	-9.513	-13.513	7.991
1	12	A_G15:A8_B	7.036	-4.936	0.275	24.274	5.012	-12.475
1	14	A_G17:C3_B	-0.278	-0.411	-0.157	-3.053	3.53	-4.622

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.