7EOJ: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 7EOJ PDB ID: 7EOJ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_C3:G47_A	0.262	-0.086	-0.202	7.211	-15.503	2.304
1	5	A_C5:G45_A	0.227	-0.089	0.388	-15.562	-12.774	-0.239
1	6	A_C7:G44_A	0.381	-0.116	-0.063	0.219	-1.362	1.934
1	10	A_C11:G39_A	0.118	-0.062	-0.248	13.954	-16.772	3.044
1	12	A_C13:G37_A	-0.012	-0.056	0.203	-8.21	-17.032	1.598
1	15	A_C16:G27_A	0.265	-0.267	0.212	1.473	-16.029	2.055
1	17	A_C18:G25_A	0.13	-0.599	-0.266	-5.278	4.214	-6.735
1	18	A_C19:G24_A	0.75	-0.737	-0.177	10.087	1.615	-7.201
1	2	A_G2:C48_A	-0.418	-0.144	0.094	6.617	-18.493	0.929
1	4	A_G4:C46_A	-0.193	-0.147	-0.11	-11.692	-19.999	1.663
1	8	A_G9:C33_A	-0.052	5.403	0.359	22.971	24.164	124.426
1	9	A_G10:U40_A	-2.666	-0.612	0.176	8.059	-3.643	-5.466
1	11	A_G12:C38_A	-0.206	-0.215	-0.108	-6.345	-15.41	-0.231
1	14	A_G15:C28_A	-0.232	-0.094	0.32	2.693	-8.795	4.617
1	16	A_G17:C26_A	-1.005	-0.086	0.179	-9.251	-14.298	3.91
1	1	A_GDP1:C49_A	-0.223	-0.105	0.159	-0.235	-4.555	-2.914
1	7	A_U8:U42_A	2.312	-1.842	0.167	-1.333	-14.898	9.733
1	13	A_U14:A36_A	0.471	0.004	0.464	-11.581	-10.739	-4.033
1	19	A_U32:U35_A	3.514	-0.187	0.147	37.782	19.952	-91.799

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.