7EOJ: Base Pair Morphology Step Parameters

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NDB ID: 7EOJ PDB ID: 7EOJ

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_C3G4:C46G47_AA	0.278	-1.76	3.551	0.989	16.482	29.874	-5.522	-0.325	2.302	29.323	-1.76	34.042
1	5	AA_C5C7:G44G45_AA	-1.358	-1.519	2.86	7.82	5.537	51.37	-2.029	1.97	2.478	6.324	-8.932	52.197
1	6	AA_C7U8:U42G44_AA	2.551	-0.16	3.188	6.934	3.367	61.181	-0.316	-2.162	3.419	3.294	-6.783	61.618
1	9	AA_C11G12:C38G39_AA	-0.784	-1.772	3.672	-2.354	15.531	30.957	-5.396	0.951	2.57	27.026	4.096	34.627
1	11	AA_C13U14:A36G37_AA	-0.531	-1.223	3.329	-1.327	9.974	35.02	-3.307	0.67	2.901	16.166	2.151	36.393
1	14	AA_C16G17:C26G27_AA	0.22	-1.926	3.262	-0.071	10.57	24.481	-6.615	-0.493	2.249	23.571	0.158	26.633
1	16	AA_C18C19:G24G25_AA	0.601	-2.401	2.927	-1.592	-2.063	33.768	-3.819	-1.266	3.033	-3.545	2.735	33.866
1	2	AA_G2C3:G47C48_AA	0.456	-1.494	3.158	2.124	8.36	34.715	-3.542	-0.461	2.758	13.75	-3.494	35.738
1	4	AA_G4C5:G45C46_AA	-0.199	-1.318	3.241	-2.965	10.42	35.59	-3.375	-0.06	2.767	16.579	4.717	37.151
1	8	AA_G9G10:U40C33_AA	-4.599	-3.117	1.09	34.648	-30.303	26.923	-3.307	5.374	-0.633	-40.34	-46.124	52.953
1	10	AA_G12C13:G37C38_AA	0.377	-1.465	3.249	-0.398	5.791	34.15	-3.314	-0.693	2.964	9.774	0.672	34.625
1	13	AA_G15C16:G27C28_AA	-0.299	-1.792	3.228	0.297	2.449	34.454	-3.384	0.549	3.094	4.128	-0.501	34.54
1	15	AA_G17C18:G25C26_AA	-0.228	-2.597	3.231	7.419	2.297	38.392	-4.141	1.194	2.983	3.45	-11.143	39.14
1	1	AA_GDP1G2:C48C49_AA	-0.021	-1.424	3.132	-0.598	6.758	30.068	-3.882	-0.067	2.754	12.822	1.134	30.807
1	7	AA_U8G9:C33U42_AA	4.989	-1.753	4.505	-33.816	20.41	-9.251	-3.7	-3.121	6.084	-39.965	-66.214	-40.525
1	12	AA_U14G15:C28A36_AA	-0.935	-3.259	2.596	1.109	6.84	4.383	-27.134	7.243	-1.456	56.979	-9.241	8.197

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.