A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: PDE060  PDB ID: 7ICR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA3:DT5_P0.643-0.448-0.016-2.22-3.9311.455
11T_DC2:DG6_P0.808-0.3220.266-4.709-12.6131.487
14T_DC5:DG3_P0.276-0.460.374-10.407-8.858-1.005
16T_DG7:DC1_P-0.669-0.2260.17411.304-23.097-0.213
13T_DT4:DA4_P-0.692-0.640.2773.972-17.5024.849
15T_DT6:DA2_P-0.469-0.0740.126-11.888-14.7323.734

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.