A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 3-Mar-2021 number of released structures: 11234
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NDB ID: 7JJF  PDB ID: 7JJF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_A57:G77_A-6.832-4.404-0.144-3.1415.31-2.968
12A_C49:G84_A0.868-0.206-0.00712.607-17.538-3.369
14A_C51:G82_A0.494-0.2760.1822.545-15.9382.047
15A_C52:G81_A0.366-0.210.079-7.243-12.843-1.776
19A_C58:G76_A0.139-0.178-0.0878.0132.384.613
11A_G48:U85_A-2.426-0.5710.344.773-8.9810.004
110A_G59:A75_A7.101-5.2890.75518.115-2.004-19.39
13A_U50:A83_A-0.086-0.07-0.0539.544-10.428-5.498
16A_U53:C80_A5.763-2.114-0.141-8.855-13.774-11.681
17A_U56:A78_A4.012-1.867-0.7256.017-20.299-105.836

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.