7JJF: Base Pair Morphology Parameters

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As of 3-Mar-2021 number of released structures: 11234

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NDB ID: 7JJF PDB ID: 7JJF

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	8	A_A57:G77_A	-6.832	-4.404	-0.144	-3.141	5.31	-2.968
1	2	A_C49:G84_A	0.868	-0.206	-0.007	12.607	-17.538	-3.369
1	4	A_C51:G82_A	0.494	-0.276	0.182	2.545	-15.938	2.047
1	5	A_C52:G81_A	0.366	-0.21	0.079	-7.243	-12.843	-1.776
1	9	A_C58:G76_A	0.139	-0.178	-0.087	8.013	2.38	4.613
1	1	A_G48:U85_A	-2.426	-0.571	0.34	4.773	-8.981	0.004
1	10	A_G59:A75_A	7.101	-5.289	0.755	18.115	-2.004	-19.39
1	3	A_U50:A83_A	-0.086	-0.07	-0.053	9.544	-10.428	-5.498
1	6	A_U53:C80_A	5.763	-2.114	-0.141	-8.855	-13.774	-11.681
1	7	A_U56:A78_A	4.012	-1.867	-0.725	6.017	-20.299	-105.836

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.