7JJF: Base Pair Morphology Step Parameters

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As of 3-Mar-2021 number of released structures: 11234

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NDB ID: 7JJF PDB ID: 7JJF

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	8	AA_A57C58:G76G77_AA	0.206	-1.07	3.023	-2.587	2.494	60.657	-1.168	-0.318	2.971	2.467	2.559	60.753
1	2	AA_C49U50:A83G84_AA	-0.326	-1.854	3.244	-2.305	7.989	26.804	-5.553	0.174	2.611	16.729	4.828	28.041
1	4	AA_C51C52:G81G82_AA	-0.775	-1.933	3.321	0.68	7.248	31.816	-4.637	1.492	2.807	13.01	-1.221	32.617
1	5	AA_C52U53:C80G81_AA	-0.58	-0.996	3.5	6.817	10.637	52.386	-1.787	1.08	3.164	11.854	-7.597	53.784
1	9	AA_C58G59:A75G76_AA	-2.798	-1.293	2.94	-6.976	6.704	49.855	-1.948	2.809	3.093	7.867	8.186	50.726
1	1	AA_G48C49:G84U85_AA	-0.089	-1.079	2.983	1.992	5.055	43.559	-1.872	0.288	2.84	6.78	-2.671	43.88
1	3	AA_U50C51:G82A83_AA	0.642	-1.525	3.246	-1.416	5.72	37.49	-3.045	-1.16	2.965	8.833	2.187	37.934
1	6	AA_U53U56:A78C80_AA	0.301	-0.875	6.068	3.271	-4.591	33.299	-0.11	0.478	6.132	-7.941	-5.658	33.76
1	7	AA_U56A57:G77A78_AA	5.141	-1.401	3.539	-1.968	-2.858	-11.53	10.963	21.563	3.896	13.824	-9.519	-12.039

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.