7JRR: Base Pair Morphology Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: 7JRR PDB ID: 7JRR

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A28:G7_A	-6.454	-4.751	0.653	-22.838	-3.073	1.91
1	3	A_A29:G6_A	-6.639	-3.999	0.097	6.628	-10.521	-2.588
1	11	A_A37:U49_A	0.227	0.222	0.505	-1.251	-10.303	8.918
1	15	A_C10:G22_A	0.372	-0.259	-0.436	3.357	-8.456	-0.431
1	4	A_C30:G5_A	-0.231	-0.209	-0.285	5.992	-13.329	-0.37
1	7	A_C33:G2_A	0.239	-0.166	-0.281	6.352	-12.482	6.42
1	8	A_C34:GTP1_A	0.683	-0.211	-0.041	-2.935	-8.076	-5.839
1	9	A_C35:G51_A	0.593	0.055	0.137	-5.272	-6.491	8.616
1	12	A_C38:G48_A	0.076	-0.374	0.089	-2.098	-8.944	2.734
1	14	A_G9:C23_A	-0.147	-0.287	-0.351	-1.535	-1.433	-0.66
1	17	A_G12:C20_A	-0.128	-0.109	0.022	-0.544	-15.76	-0.408
1	1	A_G27:A8_A	6.531	-4.531	0.349	17.514	23.153	4.495
1	5	A_G31:C4_A	-0.251	-0.242	0.101	5.463	-6.744	1.016
1	10	A_G36:C50_A	-0.011	-0.1	0.056	-1.783	-15.599	-0.41
1	13	A_G39:C47_A	-0.061	-0.412	0.319	-2.38	-6.685	-2.583
1	16	A_U11:A21_A	0.185	-0.078	0.09	-6.619	-11.422	9.512
1	6	A_U32:A3_A	-0.058	-0.162	0.172	4.009	-9.7	6.708

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.