A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
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NDB ID: 7JRR  PDB ID: 7JRR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A28:G7_A-6.454-4.7510.653-22.838-3.0731.91
13A_A29:G6_A-6.639-3.9990.0976.628-10.521-2.588
111A_A37:U49_A0.2270.2220.505-1.251-10.3038.918
115A_C10:G22_A0.372-0.259-0.4363.357-8.456-0.431
14A_C30:G5_A-0.231-0.209-0.2855.992-13.329-0.37
17A_C33:G2_A0.239-0.166-0.2816.352-12.4826.42
18A_C34:GTP1_A0.683-0.211-0.041-2.935-8.076-5.839
19A_C35:G51_A0.5930.0550.137-5.272-6.4918.616
112A_C38:G48_A0.076-0.3740.089-2.098-8.9442.734
114A_G9:C23_A-0.147-0.287-0.351-1.535-1.433-0.66
117A_G12:C20_A-0.128-0.1090.022-0.544-15.76-0.408
11A_G27:A8_A6.531-4.5310.34917.51423.1534.495
15A_G31:C4_A-0.251-0.2420.1015.463-6.7441.016
110A_G36:C50_A-0.011-0.10.056-1.783-15.599-0.41
113A_G39:C47_A-0.061-0.4120.319-2.38-6.685-2.583
116A_U11:A21_A0.185-0.0780.09-6.619-11.4229.512
16A_U32:A3_A-0.058-0.1620.1724.009-9.76.708

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.