A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
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NDB ID: 7JRR  PDB ID: 7JRR 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12AA_A28A29:G6G7_AA0.048-1.0022.883-10.5344.57729.585-2.56-1.7552.5398.56819.71831.69
13AA_A29C30:G5G6_AA0.503-0.7253.4470.1256.62762.663-1.003-0.4753.3646.353-0.1262.977
111AA_A37C38:G48U49_AA-0.191-1.5493.2354.5374.07930.834-3.5921.1652.9537.58-8.4331.417
114AA_C10U11:A21G22_AA-0.08-1.7873.579-3.1248.64728.692-5.243-0.4972.92116.9096.10930.1
14AA_C30G31:C4G5_AA-0.623-1.8743.317-4.03211.72625.083-6.410.4222.29825.1338.64227.937
17AA_C33C34:GTP1G2_AA0.185-1.8023.3812.958.99736.899-3.8750.0812.88413.934-4.56938.054
18AA_C34C35:G51GTP1_AA-1.139-2.5513.2460.9629.49410.761-16.0975.150.67741.462-4.20214.373
19AA_C35G36:C50G51_AA-0.226-1.753.095-0.42910.14829.996-4.8290.3462.39318.9350.831.632
112AA_C38G39:C47G48_AA0.215-1.7193.0763.44915.36430.563-4.910.0842.01927.013-6.06434.294
113AA_G9C10:G22C23_AA-0.373-2.2583.2440.8252.29529.844-4.8290.8863.0554.447-1.59829.941
11AA_G27A28:G7A8_AA-0.903-1.444.467-4.773-9.011-10.60814.668-8.3162.05538.868-20.589-14.704
15AA_G31U32:A3C4_AA-0.083-1.4533.379-3.1110.1331.364-4.213-0.3632.78418.1045.55733.063
110AA_G36A37:U49C50_AA0.189-1.363.113-1.6740.45934.127-2.384-0.5733.0820.7822.8534.169
115AA_U11G12:C20A21_AA-0.688-1.4543.213.3458.11428.459-4.3781.9772.60916.029-6.60929.755
16AA_U32C33:G2A3_AA0.369-1.4693.0773.7888.46533.413-3.632-0.0992.66214.382-6.43634.641

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.