A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
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NDB ID: 7JRS  PDB ID: 7JRS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
115A_A3:U108_B-0.1710.0860.1619.747-14.598-5.557
121A_A10:U126_A0.0710.140.094-11.532-11.37-2.456
125A_A17:G122_A-6.49-4.950.909-16.3066.655-4.665
126A_A18:G121_A-6.625-3.766-0.1279.039-9.593-3.994
129A_A21:U118_A0.052-0.082-0.223-2.854-7.274-2.774
133A_A25:U114_A0.558-0.002-0.061-6.125-11.6991.563
150A_A31:U102_A0.2020.107-0.31-6.9842.7521.711
154A_A35:U98_A0.370.218-0.3090.458-3.785-3.073
158A_A39:U94_A0.5770.1160.1570.652-23.1182.413
189A_A64:A72_A-1.303-1.2160.03717.142.316170.845
160A_A82:G57_A-6.731-4.270.502-20.3264.1-9.079
161A_A83:G56_A-6.619-3.375-0.024.974-5.349-2.845
163A_A85:U54_A-0.0280.065-0.267-9.565-5.0692.566
169A_A91:U48_A-0.0720.283-0.183-6.537-2.801-2.786
116A_C4:G107_B-0.029-0.0810.0342.222-5.9821.445
118A_C6:G105_B2.247-0.5960.5110.527-30.4885.474
123A_C12:G124_A0.4680.066-0.2833.669-3.4967.751
127A_C19:G120_A0.068-0.091-0.28514.735-11.879-0.946
128A_C20:G119_A-1.2680.7850.0976.022-10.5315.113
131A_C23:G116_A0.0260.023-0.0315.156-3.4964.189
134A_C26:G113_A0.729-0.0230.1932.262-10.8328.828
148A_C29:G104_A-1.4840.379-0.42319.724-24.47218.029
151A_C32:G101_A0.4710.152-0.2295.828-9.1532.562
156A_C37:G96_A-1.5810.548-0.0512.713-13.6686.709
185A_C60:G76_A0.1160.136-0.3046.151-4.4546.604
186A_C61:G75_A0.1170.038-0.2585.102-5.494.027
162A_C84:G55_A-0.0570.104-0.40213.03-6.836-0.159
164A_C86:G53_A-1.1170.7240.035-2.037-12.24317.926
168A_C90:G49_A-0.153-0.067-0.2676.029-0.0492.29
113A_G1:C110_B-0.392-0.1920.05-6.151-12.085-6.097
114A_G2:C109_B-0.217-0.1210.236-4.555-12.853-1.412
117A_G5:C106_B-0.004-0.159-0.065-1.585-19.356-2.71
119A_G8:C128_A0.021-0.0360.1227.301-3.268-1.704
122A_G11:C125_A-0.102-0.078-0.225-7.693-8.054-4.224
124A_G16:A123_A6.302-3.9860.3824.62624.8919.709
132A_G24:U115_A-0.4411.2390.278-2.519-9.10322.493
136A_G28:C111_A-0.134-0.3120.3844.561-11.372-13.226
149A_G30:C103_A-0.3570.124-0.691-20.271-7.7839.587
155A_G36:C97_A-0.2510.034-0.247-4.515-9.006-1.876
157A_G38:C95_A-0.1250.288-0.012-5.916-10.1623.075
184A_G59:C77_A-0.375-0.058-0.363-0.777-0.811.509
188A_G63:C73_A1.6150.938-0.579-23.844-9.27915.812
159A_G81:A58_A6.397-4.1190.55619.10227.0925.062
166A_G88:C51_A-0.0150.019-0.087-2.8450.1822.511
170A_G92:C47_A0.1460.1980.057-9.605-16.08-0.149
171A_G93:C46_A-0.1850.287-0.023-9.452-14.603-1.15
120A_U9:A127_A0.198-0.137-0.0471.121-12.834.818
130A_U22:A117_A0.090.0130.1531.4960.2971.231
135A_U27:A112_A-0.0530.2070.327-2.967-30.867-9.244
152A_U33:A100_A-0.1970.314-0.2138.277-12.625-6.987
153A_U34:G99_A-0.2260.660.1666.441-4.5426.657
187A_U62:G74_A0.1570.7450.179-4.869-8.53213.979
165A_U87:A52_A0.0480.159-0.1450.444-0.5313.799
167A_U89:G50_A1.979-0.151-0.1336.259-7.3535.205
139B_A3:U108_A-0.3360.0420.1189.164-14.965-0.804
145B_A10:U126_B-0.005-0.091-0.02-9.049-2.336-8.917
11B_A17:G122_B-6.511-4.4390.48-18.1589.348-3.571
12B_A18:G121_B-6.506-3.485-0.0929.15-6.727-2.008
15B_A21:U118_B-0.1810.244-0.323-7.272-8.50410.171
19B_A25:U114_B-0.230.033-0.081-1.058-7.7651.003
1110B_A31:U102_B0.2270.194-0.2221.888-6.393-6.347
1114B_A35:U98_B0.3060.14-0.24-6.337-4.195-0.727
1118B_A39:U94_B0.287-0.093-0.696-17.017-19.5556.491
1101B_A52:U87_B-0.225-0.0030.073-0.099-1.8742.022
1107B_A58:G81_B-6.438-4.2960.408-19.50723.5345.118
174B_A68:U43_A-0.1460.1340.1472.134-13.556-7.159
178B_A72:A64_B-2.6341.01-1.304-33.43310.692-8.231
140B_C4:G107_A0.1430.1550.029.517-11.8066.777
142B_C6:G105_A0.247-0.057-0.39.056-2.4934.177
147B_C12:G124_B0.45-0.208-0.2451.621-4.4935.183
13B_C19:G120_B-0.2410.137-0.33514.156-12.8432.934
14B_C20:G119_B0.1450.155-0.2996.28-6.9016.784
17B_C23:G116_B0.2110.007-0.2174.952.7253.618
110B_C26:G113_B-0.0680.103-0.2371.2511.103-0.098
1108B_C29:G104_B-1.2280.5910.3224.073-21.09216.376
1111B_C32:G101_B0.1080.153-0.3657.727-7.7480.423
1116B_C37:G96_B-1.2050.578-0.5425.9549.3697.432
191B_C41:G70_A0.420.065-0.1553.283-10.1163.225
192B_C42:G69_A0.116-0.019-0.063-3.056-14.55-1.168
194B_C45:G66_A0.362-0.4320.1577.727-14.89-9.247
195B_C46:G93_B-0.063-0.077-0.2398.613-13.214-0.324
196B_C47:G92_B0.2830.0750.0832.424-17.5721.75
1100B_C51:G88_B0.3280.0940.014.825-4.5193.901
173B_C67:G44_A-0.167-0.130.528-2.544-8.694-0.121
177B_C71:G40_A2.2670.160.67-3.922-32.01215.588
179B_C73:G63_B0.4650.197-0.2657.1350.2534.08
183B_C77:G59_B2.372-0.479-0.238-6.987-11.279-3.804
137B_G1:C110_A-0.278-0.054-0.431-12.907-29.215-22.434
138B_G2:C109_A-0.378-0.0850.585-0.018-14.48-8.472
141B_G5:C106_A-0.2560.009-0.262-2.335-4.1731.36
143B_G8:C128_B-0.5670.0320.254-0.302-10.3595.626
146B_G11:C125_B-0.3280.041-0.429-1.999-6.908-0.356
18B_G24:U115_B-1.615-0.130.1763.495-7.413.602
112B_G28:C111_B-0.3630.2140.065-6.793-10.165-3.696
1109B_G30:C103_B-0.0640.249-0.18-3.346-5.0491.984
1115B_G36:C97_B-0.250.282-0.568-9.981-3.2194.778
1117B_G38:C95_B-0.049-0.005-0.333.7791.1224.289
190B_G40:C71_A0.162-0.073-0.68-23.4197.247-7.384
193B_G44:C67_A0.497-0.2420.4173.1-13.278-7.913
198B_G49:C90_B-0.3040.0560.0461.827-4.51-0.89
199B_G50:U89_B-0.6981.2930.195-1.289-9.5721.737
1102B_G53:C86_B-0.295-0.119-0.324-4.971-8.1661.471
1104B_G55:C84_B-0.168-0.086-0.472-15.66-14.537-1.281
1105B_G56:A83_B6.652-4.075-0.101-9.189-4.545-5.399
1106B_G57:A82_B6.384-4.7571.09517.5838.989-7.938
172B_G66:C45_A-0.482-0.2580.264-6.476-8.067-0.877
175B_G69:C42_A-0.25-0.0430.0121.645-9.7531.208
176B_G70:C41_A-0.10.003-0.088-5.396-17.6043.248
180B_G74:U62_B-0.4570.4930.1931.878-11.90611.056
181B_G75:C61_B-0.1730.046-0.126-5.488-8.7070.881
182B_G76:C60_B-0.0510.031-0.22-8.844-6.4480.812
144B_U9:A127_B-0.28-0.03-0.59913.15-26.304-12.237
16B_U22:A117_B-0.180.101-0.184-1.5710.0040.869
111B_U27:A112_B0.3920.228-0.2340.781-15.4690.038
1112B_U33:A100_B-0.3380.24-0.318-0.213-8.873-2.349
1113B_U34:G99_B0.5850.759-0.0362.744-5.84711.351
197B_U48:A91_B-0.0080.0380.0740.05-2.256-4.686
1103B_U54:A85_B0.150.0530.1661.32-6.1027.571

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.