A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
Search for released structures

NDB ID: 7JRS  PDB ID: 7JRS 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
115AA_A3C4:G107U108_BB0.158-1.7593.528-1.598.65135.402-4.032-0.4773.01913.9622.56636.445
120AA_A10G11:C125U126_AA0.305-1.7953.332.8374.17527.096-4.7710.043.048.814-5.9927.554
123AA_A17A18:G121G122_AA-0.611-0.7343.101-9.858.51334.129-2.295-0.3212.90313.89416.07636.458
124AA_A18C19:G120G121_AA0.52-0.7763.364-2.7464.30961.829-0.955-0.6343.2854.1862.66762.019
127AA_A21U22:A117U118_AA0.261-1.5093.245-3.0287.52130.242-4.127-1.0192.7614.15.67731.286
131AA_A25C26:G113U114_AA0.53-1.4543.126-0.024-0.37531.975-2.575-0.9663.142-0.680.04431.977
147AA_A31C32:G101U102_AA0.485-1.7983.0972.6760.6330.477-3.525-0.4173.091.195-5.07830.598
151AA_A35G36:C97U98_AA0.028-1.6913.374-1.1427.18629.301-4.67-0.2792.88413.9362.21530.172
184AB_A64G40:C71A72_AA-1.945-3.633-0.51669.701-133.782128.636-1.8280.9780.513-68.121-35.491167.478
156AA_A82A83:G56G57_AA-0.051-0.6663.426-18.3389.84630.704-2.423-2.4752.71316.43830.61636.953
157AA_A83C84:G55G56_AA0.313-0.7053.2420.6452.25159.609-0.82-0.2833.2192.264-0.64959.651
159AA_A85C86:G53U54_AA0.984-1.7863.0042.1864.87825.727-5.088-1.6462.69710.807-4.84426.267
165AA_A91G92:C47U48_AA0.657-1.9373.4692.0062.97428.619-4.578-0.8553.2925.986-4.03728.839
116AA_C4G5:C106G107_BB0.082-1.5963.224.32914.08130.61-4.7450.4772.27924.941-7.66833.894
125AA_C19C20:G119G120_AA0.246-2.5923.361-5.71714.13122.81-8.289-1.6571.43831.59912.78427.378
126AA_C20A21:U118G119_AA-1.215-1.263.643-1.0099.57135.112-3.4461.7963.23315.5081.63636.367
129AA_C23G24:U115G116_AA1.289-1.6943.1560.74314.227.71-5.477-2.2852.09227.475-1.43931.082
132AA_C26U27:A112G113_AA-0.333-1.7363.3096.243.12231.813-3.6291.6593.0125.611-11.21532.55
145AA_C29G30:C103G104_AA-0.697-1.3514.227-3.54222.35637.246-4.4480.5283.03631.6815.01943.375
148AA_C32U33:A100G101_AA-1.258-2.1973.403-3.0363.09723.85-6.2352.0133.2287.4177.26924.235
153AA_C37G38:C95G96_AA-0.005-1.2083.535-2.51310.62134.451-3.497-0.3593.03617.44.11736.089
180AA_C60C61:G75G76_AA-0.29-1.7043.4030.834.37529.369-4.2450.7413.1138.567-1.62529.698
181AA_C61U62:G74G75_AA0.707-1.5273.5541.1738.54530.932-4.345-1.0613.05815.644-2.14732.084
158AA_C84A85:U54G55_AA0.033-1.8083.924-1.29310.15130.527-5.288-0.3183.17218.6322.37332.158
160AA_C86U87:A52G53_AA-0.888-1.1363.111-2.08813.53733.206-3.5871.1732.52222.5323.47535.846
164AA_C90A91:U48G49_AA-0.479-1.6293.6790.20811.79530.854-4.9490.882.87721.222-0.37532.981
113AA_G1G2:C109C110_BB-0.081-1.5283.11-0.932.10934.586-2.8690.0023.0153.5421.56234.66
114AA_G2A3:U108C109_BB0.038-1.3062.8773.8676.68530.111-3.5150.5522.52112.609-7.29431.064
117AA_G5C6:G105C106_BB-0.242-1.5133.261-6.4574.07642.167-2.472-0.3023.1115.618.88842.821
118AA_G8U9:A127C128_AA0.471-2.063.3691.97113.1335.617-4.727-0.4912.50320.603-3.09337.936
121AA_G11C12:G124C125_AA0.702-1.7163.173-0.172-3.10833.22-2.477-1.253.312-5.4210.333.361
122AA_G16A17:G122A123_AA-1.192-2.0124.749-9.764-13.441-8.71113.526-8.9990.15550.581-36.742-18.744
130AA_G24A25:U114U115_AA-1.478-1.3563.3910.1469.19333.487-3.6592.5012.92115.593-0.24734.692
134AB_G28G1:C110C111_AA1.019-1.963.9129.7917.64430.12-5.070.1943.4813.985-17.91232.526
146AA_G30A31:U102C103_AA-0.643-1.3492.904-4.4998.85129.159-4.0040.4692.46816.9718.62630.768
152AA_G36C37:G96C97_AA0.52-1.6613.1970.727-2.75425.999-2.919-0.953.365-6.098-1.6126.152
154AA_G38A39:U94C95_AA0.107-1.3273.2093.669-0.06133.025-2.310.4173.204-0.107-6.42933.223
179AA_G59C60:G76C77_AA0.456-1.7933.1960.8890.1932.058-3.279-0.6693.1970.345-1.6132.07
183AA_G63A64:A72C73_AA1.6222.41-0.936145.41-96.745-164.806-1.2390.759-0.9348.38672.725-179.293
155AA_G81A82:G57A58_AA-1.183-0.9094.462-2.794-13.989-4.9716.366-7.0780.41269.515-13.884-15.102
162AA_G88U89:G50C51_AA0.421-1.5173.1271.8215.9337.395-3.038-0.4332.8789.171-2.81737.888
166AA_G92G93:C46C47_AA0.043-1.7973.3474.6934.98331.741-4.0750.7333.0138.981-8.45732.452
167AB_G93G66:C45C46_AA0.535-2.2493.0170.7713.25927.637-5.366-0.952.7526.79-1.60627.835
119AA_U9A10:U126A127_AA-0.242-1.3773.3092.29517.80533.87-4.1570.6342.30828.236-3.6438.21
128AA_U22C23:G116A117_AA0.136-1.6313.0611.91910.17830.237-4.5530.0532.40418.829-3.55131.923
133AA_U27G28:C111A112_AA0.111-2.3153.3753.6412.82727.827-5.4110.6213.1185.827-7.50628.199
149AA_U33U34:G99A100_AA0.827-1.6513.235-1.9219.65831.362-4.426-1.7632.57317.3383.44832.834
150AA_U34A35:U98G99_AA-0.654-1.5363.1571.62215.96131.293-4.5971.2932.11527.446-2.7935.074
182AA_U62G63:C73G74_AA0.074-1.1813.6499.71221.34632.675-4.2421.0372.40433.153-15.08440.033
161AA_U87G88:C51A52_AA-0.06-1.3613.091-0.94621.027.89-4.893-0.0171.68837.5541.69234.799
163AA_U89C90:G49G50_AA-0.609-2.0253.3071.7665.77623.102-6.6512.0092.67514.115-4.31523.868
137BB_A3C4:G107U108_AA0.4-1.513.175-0.2048.84635.08-3.578-0.6712.72414.3950.33136.144
143BB_A10G11:C125U126_BB1.059-1.7473.2944.8593.77326.739-4.615-1.0353.1618.025-10.33327.425
11BB_A17A18:G121G122_BB-0.166-1.0273.171-13.2556.65632.656-2.586-1.552.77611.14922.20135.783
12BB_A18C19:G120G121_BB0.522-0.5863.3270.7652.79560.248-0.722-0.4823.3062.783-0.76260.311
15BB_A21U22:A117U118_BB-0.868-1.5213.045-1.99610.71730.009-4.4521.2682.42419.8913.70431.884
19BB_A25C26:G113U114_BB-0.389-1.6423.429-1.4642.89131.45-3.5650.4343.2835.3162.69231.613
1104BB_A31C32:G101U102_BB0.501-1.5923.2620.951-0.50530.367-2.936-0.7653.302-0.963-1.81530.385
1108BB_A35G36:C97U98_BB0.445-1.9163.8191.6982.52826.007-5.013-0.4563.6415.593-3.75726.182
196BB_A52G53:C86U87_BB-0.173-1.5193.2431.25215.04731.486-4.580.462.29425.945-2.15834.836
170BB_A68G69:C42U43_AA0.23-1.5613.1950.94911.38232.961-4.17-0.2542.53919.351-1.61434.831
174BB_A72C73:G63A64_BB-1.256-1.4152.919-14.61114.99223.78-5.065-0.0952.1229.99429.23231.582
138BB_C4G5:C106G107_AA-0.63-1.6373.296-1.64412.9329.503-5.0590.8682.41523.9693.04732.195
140BB_C6G8:C128G105_BA0.355-4.1645.982-0.52427.12460.544-5.608-0.3613.99625.5710.49465.815
13BB_C19C20:G119G120_BB0.094-1.7643.641-0.8582.85830.786-3.91-0.3573.4635.3671.61130.927
14BB_C20A21:U118G119_BB0.348-1.7413.462.35713.29628.984-5.467-0.2252.46424.929-4.41931.914
17BB_C23G24:U115G116_BB0.578-2.1123.078-1.65716.08922.083-7.406-1.5261.23436.383.74627.313
110BB_C26U27:A112G113_BB0.722-1.8333.4345.2542.39430.445-3.917-0.2893.3584.508-9.89230.975
1102BB_C29G30:C103G104_BB-0.88-1.1813.429-2.7879.2434.215-3.3061.033.07715.334.62535.511
1105BB_C32U33:A100G101_BB-0.235-1.7553.366-0.1419.84929.802-5.0030.4092.66618.5240.26431.353
1110BB_C37G38:C95G96_BB-0.1-1.3463.301-3.12915.15131.598-4.33-0.2672.42425.9665.36435.095
186BB_C41C42:G69G70_AA0.058-1.4793.2341.2089.53434.096-3.7390.072.73515.873-2.01235.385
187BB_C42G44:C67G69_AA-0.666-3.6736.158-2.60716.17557.061-5.1650.4415.06416.5592.66959.176
189BB_C45C46:G93G66_BA-0.008-1.6513.251.330.96827.5-3.70.3383.1872.034-2.79527.548
190BB_C46C47:G92G93_BB0.708-1.4963.64-0.7535.16736.834-3.088-1.2193.3928.1261.18437.189
191BB_C47U48:A91G92_BB-1.087-1.8093.424-3.2484.21328.37-4.5941.4393.2298.5026.55528.855
195BB_C51A52:U87G88_BB0.009-1.5473.243-0.38813.06928.437-5.087-0.0832.32425.00.74231.242
169BB_C67A68:U43G44_AA0.031-1.4923.0046.4079.7828.666-4.4070.9952.33518.796-12.31330.912
173BB_C71A72:A64G40_BA0.726-2.4453.59318.78412.03919.753-7.3312.5841.87726.431-41.23929.715
175BB_C73G74:U62G63_BB0.512-1.5012.956-0.84522.00729.644-4.664-0.8981.50737.2321.4336.782
135BB_G1G2:C109C110_AA0.004-0.9952.67-8.85-3.86836.743-1.118-0.9482.685-6.00913.74937.948
136BB_G2A3:U108C109_AA1.022-1.623.1455.5919.00327.901-4.872-0.9162.65617.876-11.10129.808
139BB_G5C6:G105C106_AA-0.092-1.6162.99-1.4291.58531.839-3.2-0.0662.912.8852.60231.908
141BB_G8U9:A127C128_BB0.856-1.7543.1237.3994.08919.165-6.480.6352.82311.578-20.95420.931
144BB_G11C12:G124C125_BB0.077-1.7353.243-2.6821.69634.616-3.158-0.5293.1432.8424.49634.757
18BB_G24A25:U114U115_BB-0.418-1.4513.429-1.4075.93437.078-3.0410.4633.189.2542.19437.559
112BA_G28G1:C110C111_BB0.773-2.2653.2154.4635.04226.502-5.972-0.5932.83310.778-9.54227.329
1103BB_G30A31:U102C103_BB-0.632-1.4333.175-1.024.09730.473-3.461.0022.987.7491.92930.758
1109BB_G36C37:G96C97_BB-0.241-1.8053.138-2.9380.023.388-4.419-0.3593.144-0.0017.21123.569
1111BB_G38A39:U94C95_BB0.732-1.683.8673.33715.27237.046-4.367-0.6483.02422.83-4.98940.102
185BB_G40C41:G70C71_AA0.668-1.2222.976-7.11614.91125.561-4.706-2.4071.7730.03314.33230.361
188BB_G44C45:G66C67_AA0.416-1.3063.2382.353-6.82537.092-1.111-0.3313.435-10.605-3.65637.764
193BB_G49G50:U89C90_BB1.636-1.6433.2950.0239.66928.97-4.91-3.1042.62418.682-0.04530.508
194BB_G50C51:G88U89_BB-1.124-1.6093.086-1.077.51132.271-3.9531.8112.68913.2861.89333.128
197BB_G53U54:A85C86_BB0.607-1.5743.267-2.7883.90330.973-3.621-1.632.9877.2535.18231.333
199BB_G55G56:A83C84_BB-0.459-1.113.2771.5314.91262.777-1.2790.5083.1814.707-1.46762.966
1100BB_G56G57:A82A83_BB0.535-0.553.07512.95210.93631.38-2.4170.922.74818.616-22.04935.565
1101BB_G57A58:G81A82_BB1.106-1.4094.6275.28-16.763-7.18513.6496.3070.20964.79720.412-18.976
168BB_G66C67:G44C45_AA-0.125-1.7643.211-0.209-4.06934.279-2.3350.1773.392-6.8730.35334.513
171BB_G69G70:C41C42_AA-0.21-1.5473.3420.4919.05835.419-3.6750.42.8714.594-0.79136.526
172BB_G70C71:G40C41_AA0.216-1.153.382-2.10310.37638.888-2.836-0.552.97615.2443.0940.249
176BB_G74G75:C61U62_BB-0.759-1.5013.256-1.95110.58632.896-4.0540.9962.69818.0993.33534.566
177BB_G75G76:C60C61_BB-0.024-1.7133.407-0.9434.87231.628-3.99-0.1273.1148.8711.71732.005
178BB_G76C77:G59C60_BB-0.293-1.3893.4081.8991.03741.49-2.0720.6223.3581.463-2.67841.543
142BB_U9A10:U126A127_BB0.022-1.6443.807-4.05722.91238.919-4.292-0.4092.50231.2325.5345.111
16BB_U22C23:G116A117_BB0.198-1.3792.9831.00316.95628.306-4.759-0.2111.88431.357-1.85632.922
111BB_U27G28:C111A112_BB-0.014-1.8113.6784.4937.9528.652-5.2120.9973.0415.572-8.830.043
1106BB_U33U34:G99A100_BB0.789-1.3483.078-0.2569.27332.237-3.688-1.4072.59516.2830.4533.511
1107BB_U34A35:U98G99_BB-0.742-1.6433.119-0.36618.49730.192-4.9631.1791.84632.0130.63435.297
192BB_U48G49:C90A91_BB0.215-1.4673.1241.0426.80829.158-4.115-0.222.72513.289-2.03429.943
198BB_U54G55:C84A85_BB0.309-2.3463.6616.33614.16626.738-7.0640.6052.18827.852-12.45730.844

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.