A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
Search for released structures

NDB ID: 7JRT  PDB ID: 7JRT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
131A_A14:U108_B-0.521-0.258-0.128-4.096-9.4123.006
138A_A22:U53_A-0.263-0.2930.0380.267-12.179-3.875
147A_A36:A44_A2.8751.319-0.1715.364-2.842-1.797
15A_A61:U7_A0.016-0.6560.1165.896-9.582-4.298
18A_A64:U4_A0.1180.0990.1855.693-10.4152.229
116A_A72:U130_A0.767-0.20.13-2.618-17.146.407
151A_A82:U40_A-0.339-0.2730.03-1.071-15.812-1.961
154A_A85:G124_A0.2311.853-0.88-14.5811.019-21.209
158A_A89:U120_A-0.623-0.5640.3080.868-16.294-12.507
134A_C17:G105_B1.076-0.135-0.02-4.6810.544.666
135A_C19:G56_A-0.44-0.124-0.1282.748-14.466-4.151
136A_C20:G55_A-0.15-0.3870.0580.046-11.008-2.205
137A_C21:G54_A-0.417-0.5690.221.824-9.854-5.012
141A_C30:G50_A0.19-0.1410.0-1.282-7.7630.396
142A_C31:G49_A-0.024-0.184-0.2366.767-13.0434.951
13A_C59:G9_A0.275-0.092-0.3666.128-8.531-4.714
110A_C66:G2_A0.28-0.1780.3924.681-8.221-0.104
111A_C67:G1_A0.096-0.315-0.26210.087-11.503-10.841
112A_C68:G134_A-0.583-0.1190.294-1.978-9.377-3.458
149A_C80:G42_A0.004-0.2350.249-2.993-9.084-1.036
153A_C84:G38_A0.827-0.067-0.0930.9962.4514.301
155A_C86:G123_A-0.259-0.1250.2236.515-9.432.482
161A_C97:G117_A0.178-0.435-0.7178.154-20.2891.61
164A_C100:G114_A0.428-0.3480.148-0.334-14.3221.331
129A_G12:C110_B0.073-0.0940.249-0.781-3.262-1.838
130A_G13:C109_B0.071-0.315-0.341-8.559-9.346-1.201
132A_G15:C107_B-0.456-0.490.2321.526-6.209-9.908
133A_G16:C106_B0.309-0.224-0.005-4.517-11.306-4.625
139A_G23:C52_A-0.014-0.1350.2981.129-12.590.022
140A_G24:C51_A-0.305-0.1990.2890.827-11.735-1.626
143A_G32:C48_A0.091-0.338-0.32-4.548-17.232.965
146A_G35:C45_A0.024-0.1620.094-1.044-4.899-0.55
11A_G57:C11_A-0.6730.238-0.37-25.952-6.421-1.102
14A_G60:C8_A0.671-0.543-0.065-1.386-3.798-13.143
16A_G62:U6_A-1.924-0.960.177-1.367-18.403-1.195
113A_G69:C133_A0.5940.0610.085-1.836-11.6060.958
114A_G70:C132_A-0.448-0.3320.007-1.24-8.8781.258
120A_G76:C126_A0.447-0.115-0.418-10.133-16.714-8.046
148A_G79:C43_A-0.1090.011-0.082-0.1740.9833.445
150A_G81:C41_A0.011-0.333-0.101-6.232-6.784-1.003
152A_G83:C39_A-0.206-0.20.086-3.348-7.524-0.347
157A_G88:C121_A-0.679-0.0560.0170.136-17.235-1.106
159A_G90:C119_A-0.89-0.1520.298-1.415-8.467-1.811
160A_G91:C118_A-0.165-0.0350.151-1.341-0.747-5.313
163A_G99:C115_A0.132-0.012-0.13-6.832-13.167-0.756
166A_G102:C112_A0.01-0.0780.1478.541-9.578-3.386
144A_U33:A47_A-0.321-0.1410.193-6.886-9.8620.541
145A_U34:G46_A2.433-0.8220.357-9.203-5.993-5.338
12A_U58:A10_A0.397-0.130.416-7.254-7.993-3.8
17A_U63:A5_A-0.014-0.1920.219-0.991-11.4480.097
19A_U65:A3_A0.664-0.1690.06113.122-13.815-2.784
115A_U71:A131_A0.053-0.1630.254-1.084-1.1376.899
117A_U73:G129_A2.953-0.8540.5240.017-18.0452.187
118A_U74:A128_A0.6740.0860.021-6.799-20.70513.088
119A_U75:A127_A0.75-0.1760.313.945-13.2680.334
121A_U77:A125_A0.776-0.237-0.106-3.657-8.8450.855
156A_U87:A122_A-0.3720.3560.2827.276-11.83812.336
162A_U98:A116_A0.204-0.2590.223-4.449-2.61-1.939
165A_U101:G113_A2.387-0.6310.201-1.91-19.3825.315
169B_A14:U108_A-0.005-0.0170.035-1.763-3.804-4.937
197B_A22:U53_B0.17-0.2690.0542.145-6.758-2.845
1106B_A36:A44_B-1.2211.825-0.90119.47813.475-17.79
177B_A61:U7_B0.651-0.338-0.243-6.849-19.035-2.407
180B_A64:U4_B-0.704-0.4370.3230.045-10.612.266
188B_A72:U130_B-0.3010.3210.809-2.151-5.0959.296
1109B_A82:U40_B2.2230.383-0.475-3.1351.787-13.265
1115B_A89:U120_B0.407-0.1520.0458.1025.3946.863
128B_A103:A111_B-2.212.908-0.07920.428-13.926-76.521
172B_C17:G105_A-0.2170.0820.055-2.719-0.9082.228
194B_C19:G56_B-0.217-0.2860.183-2.481-9.38-2.408
195B_C20:G55_B-0.285-0.3250.264-3.554-9.938-2.584
196B_C21:G54_B-0.822-0.4910.0040.313-8.933-4.124
1100B_C30:G50_B-0.534-0.058-0.79811.237-16.4055.766
1101B_C31:G49_B-0.366-0.177-0.21413.261-22.7515.911
175B_C59:G9_B-0.9570.251-0.028-0.91-6.6773.375
182B_C66:G2_B1.108-0.288-0.12219.168-12.132-4.24
183B_C67:G1_B1.086-0.285-0.0839.597-10.328-2.444
184B_C68:G134_B1.020.11-0.1715.444-5.972-1.305
1108B_C80:G42_B-0.7771.056-0.0160.312-1.737.105
1111B_C84:G38_B-0.4260.484-0.05521.778-15.864-15.27
1112B_C86:G123_B0.588-0.180.67316.61712.3678.157
122B_C97:G117_B-0.471-0.3910.287-1.792-8.411-6.713
125B_C100:G114_B0.263-0.120.313-1.849-11.487-3.201
167B_G12:C110_A-0.693-0.7060.076-6.024-10.69-1.401
168B_G13:C109_A-0.204-0.28-0.171-2.576-13.4025.333
170B_G15:C107_A1.4090.0770.0132.466-5.555-7.764
171B_G16:C106_A-0.687-0.3910.2063.141-3.236-6.62
198B_G23:C52_B0.311-0.4020.4178.846-8.243-1.468
199B_G24:C51_B0.014-0.3520.0561.211-9.739-8.59
1102B_G32:C48_B-0.547-0.2120.3973.893-15.2676.036
1105B_G35:C45_B1.3870.652-0.370.744-0.286.766
173B_G57:C11_B-0.7580.557-0.394-26.4633.4031.861
176B_G60:C8_B2.11-0.118-1.7-26.741-0.247-11.65
178B_G62:U6_B-2.371-0.7790.6463.103-10.4378.805
185B_G69:C133_B0.4930.2350.3217.231-5.508-5.14
186B_G70:C132_B0.5140.037-1.138-21.1-21.987.793
192B_G76:C126_B0.3130.090.799-21.334-5.5889.561
1107B_G79:C43_B0.6910.1620.024-4.717-16.873-5.549
1110B_G83:C39_B1.3530.154-0.2427.149-18.058-24.926
1114B_G88:C121_B-0.6260.3320.638.113-3.24918.443
1116B_G90:C119_B0.488-0.502-0.1756.9086.7981.386
1117B_G91:C118_B0.242-0.25-0.0085.081-4.4961.065
124B_G99:C115_B0.127-0.3350.154-2.623-9.265-3.061
127B_G102:C112_B-0.401-0.4290.041-2.294-20.616-5.135
1103B_U33:A47_B0.407-0.1970.3954.573-5.456-4.625
1104B_U34:G46_B2.066-0.4170.1017.894-12.253-0.846
174B_U58:A10_B-1.110.523-0.117-4.84-9.77410.569
179B_U63:A5_B0.172-0.260.3521.144-12.7979.37
181B_U65:A3_B-0.042-0.2710.07.083-9.752.471
187B_U71:A131_B-0.2620.255-0.476-9.343-7.314.546
189B_U73:G129_B3.0210.0870.474-1.681-7.88712.443
190B_U74:A128_B-0.096-0.171-1.247.522-8.68-1.938
191B_U75:A127_B0.6720.092-1.053-11.052-21.71410.702
193B_U77:A125_B-1.593-0.3831.833-7.15-18.1347.102
1113B_U87:A122_B-0.247-0.3211.184-4.9180.4825.428
123B_U98:A116_B0.236-0.490.063-0.067-14.144-2.344
126B_U101:G113_B1.882-0.3310.286-4.181-11.0927.653

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.