A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
Search for released structures

NDB ID: 7JRT  PDB ID: 7JRT 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
130AA_A14G15:C107U108_BB-0.556-1.7733.104-3.1456.85926.741-5.1680.4832.62314.4676.63327.766
136AA_A22G23:C52U53_AA0.145-1.5523.202-2.3283.27834.563-3.073-0.5823.0315.4943.90134.789
144AA_A36G79:C43A44_AA-2.807-1.4563.143-2.92914.54242.44-3.1263.4342.70719.3933.90644.845
15AA_A61G62:U6U7_AA0.493-1.8123.2230.00115.42625.99-6.125-0.9471.87631.06-0.00230.156
18AA_A64U65:A3U4_AA0.038-1.0273.0042.156.89435.2-2.5440.2112.75811.254-3.50935.911
116AA_A72U73:G129U130_AA-0.23-1.2723.184-0.839.47340.273-2.750.2432.8313.5311.18541.335
148AA_A82G83:C39U40_AA0.31-1.4953.2971.645.1435.51-3.145-0.2743.0688.368-2.67135.905
151AA_A85C86:G123G124_AA0.79-1.6033.006-11.521.83627.204-3.477-3.6462.3723.69623.18629.556
155AA_A89G90:C119U120_AA0.988-1.9743.0832.8198.17730.766-4.895-1.3462.56515.043-5.18631.93
133AA_C19C20:G55G56_AA0.185-1.5583.287-2.0779.40133.206-3.992-0.6152.74116.0363.54234.536
134AA_C20C21:G54G55_AA-0.159-1.953.117-2.7286.9628.927-5.068-0.1942.59113.6485.34829.857
135AA_C21A22:U53G54_AA-0.075-1.2853.2730.1665.68333.639-3.0650.1543.0229.733-0.28434.103
138AA_C30C31:G49G50_AA-0.701-1.8373.083-5.00210.77226.444-5.7180.4542.26922.17910.29928.945
139AA_C31G32:C48G49_AA-0.618-1.5983.477-0.70410.58934.019-4.1490.912.87917.5751.16835.589
13AA_C59G60:C8G9_AA-0.795-1.8743.505-3.13810.49536.213-4.2550.8212.92516.4274.91137.78
110AA_C66C67:G1G2_AA-0.464-2.0572.8852.9183.10430.56-4.3771.3512.6135.854-5.50230.848
111AA_C67C68:G134G1_AA0.492-2.2423.285-4.40413.05139.672-4.354-1.12.39718.5656.26441.904
112AA_C68G69:C133G134_AA-0.115-1.6383.2431.0256.20835.178-3.5210.3282.91710.172-1.67935.719
146AA_C80G81:C41G42_AA-0.202-1.7563.1232.969.21531.558-4.4710.7982.49616.465-5.28832.972
150AA_C84A85:G124G38_AA-1.872-4.6413.9411.434-4.591-3.1327.3987.5730.97928.24770.343-12.711
152AA_C86U87:A122G123_AA0.465-1.5183.07-2.0086.27931.997-3.671-1.1382.69711.2423.59532.652
157AA_C97U98:A116G117_AA-0.85-1.7843.634-13.16216.57932.919-4.772-0.3922.62726.16320.7738.979
160AA_C100U101:G113G114_AA0.182-1.3173.212.5318.00738.982-2.8070.012.90111.831-3.74139.842
128AA_G12G13:C109C110_BB-0.092-2.2293.4195.6378.39436.333-4.5090.8522.80913.15-8.83237.668
129AA_G13A14:U108C109_BB0.018-1.8993.2130.3895.90824.779-5.8590.0622.69413.523-0.8925.465
131AA_G15G16:C106C107_BB0.511-1.853.3052.02410.11136.881-4.023-0.542.74515.611-3.12538.248
132AA_G16C17:G105C106_BB0.521-1.5953.2620.766-1.57236.896-2.304-0.7193.334-2.482-1.20936.936
137AA_G23G24:C51C52_AA0.083-1.7793.1441.435.73732.499-4.0210.0762.79910.146-2.52933.018
140AA_G32U33:A47C48_AA0.102-1.3843.258-3.7148.03528.237-4.311-0.9382.73315.9817.38629.565
143AA_G35A36:A44C45_AA-0.16-0.1213.0816.2597.28639.337-0.9410.8892.95510.632-9.13440.447
11AA_G57U58:A10C11_AA-0.659-0.9942.841-11.8925.30736.102-2.102-0.312.7478.24118.46538.305
14AA_G60A61:U7C8_AA0.12-1.7733.0291.1756.68524.099-5.7890.022.45715.618-2.74525.023
16AA_G62U63:A5U6_AA-0.124-1.3053.267-2.5966.8937.486-2.835-0.1272.99110.5963.99238.177
113AA_G69G70:C132C133_AA-0.062-2.0583.16-0.7159.15825.788-6.311-0.0212.30719.7381.54127.349
114AA_G70U71:A131C132_AA0.11-1.2953.366-1.5935.43634.017-3.029-0.4323.129.2132.69934.472
120AA_G76U77:A125C126_AA0.537-1.7593.067-2.3020.80830.615-3.468-1.4332.9731.5274.3530.709
145AA_G79C80:G42C43_AA-0.229-2.1883.357-0.3641.86332.044-4.2930.3483.233.3710.65832.099
147AA_G81A82:U40C41_AA0.432-1.5313.1542.2737.09828.379-4.422-0.4052.72414.171-4.53829.322
149AA_G83C84:G38C39_AA0.965-1.7853.1842.8933.39132.357-3.739-1.2363.0596.049-5.16132.655
154AA_G88A89:U120C121_AA0.445-1.9023.135-1.5276.78526.053-5.612-1.2992.53814.7193.31326.95
156AA_G90G91:C118C119_AA0.661-2.0183.0582.3246.82131.612-4.673-0.8252.61812.32-4.19832.403
159AA_G99C100:G114C115_AA0.243-1.1793.101-1.6263.16434.699-2.413-0.6342.9715.2882.71834.875
162AB_G102G12:C110C112_AA-0.415-3.4436.499-3.11120.28466.488-4.4110.1535.39618.0622.7769.234
141AA_U33U34:G46A47_AA0.434-1.3743.2482.365.0545.967-2.167-0.3563.1066.439-3.00946.286
142AA_U34G35:C45G46_AA-0.082-2.2142.9435.8283.66521.545-6.7731.9982.4319.497-15.10222.606
12AA_U58C59:G9A10_AA-0.423-1.4992.8060.8422.30627.916-3.5521.0412.6634.769-1.7428.022
17AA_U63A64:U4A5_AA-0.195-1.4312.931.10610.69732.344-3.8570.4792.34418.573-1.92134.039
19AA_U65C66:G2A3_AA0.32-1.6923.254-0.37310.17232.072-4.453-0.612.60717.8580.65433.608
115AA_U71A72:U130A131_AA0.361-1.1733.1144.05319.06935.539-3.584-0.1222.25228.733-6.10840.383
117AA_U73U74:A128G129_AA-0.189-1.6863.0739.71410.76121.025-6.3252.6891.76625.891-23.37225.492
118AA_U74U75:A127A128_AA-0.072-0.9892.968-4.1146.82333.28-2.63-0.452.70711.7067.05834.194
119AA_U75G76:C126A127_AA-0.019-1.9423.5785.9799.69630.214-5.2331.1052.78517.824-10.99232.244
153AA_U87G88:C121A122_AA-0.68-1.853.4032.036.77828.766-5.011.7472.84813.388-4.00929.606
158AA_U98G99:C115A116_AA-0.76-1.7753.1431.4785.46229.917-4.3721.7172.74310.463-2.83130.435
161AA_U101G102:C112G113_AA-1.19-1.5872.8323.91113.02523.428-5.7693.2571.53629.141-8.74927.042
165BB_A14G15:C107U108_AA-0.036-1.6733.2773.1822.96237.921-2.9270.4513.134.54-4.87838.161
191BB_A22G23:C52U53_BB0.116-1.4963.0320.1471.58335.39-2.673-0.172.9652.602-0.24135.425
199BB_A36G79:C43A44_BB-0.443-1.6163.869-8.8521.27849.594-2.009-0.2323.851.5110.45450.344
172BB_A61G62:U6U7_BB0.775-1.9072.659-7.6988.47315.473-8.365-4.7350.99927.14124.65919.226
175BB_A64U65:A3U4_BB0.08-1.2682.9451.3237.3633.423-3.1530.0432.61612.602-2.26534.226
183BB_A72U73:G129U130_BB0.382-1.2523.2613.7073.03743.867-1.948-0.1643.1934.051-4.94444.115
1102BB_A82G83:C39U40_BB-0.02-1.5132.8482.76115.36731.405-4.3020.3551.91526.442-4.7534.984
1107BB_A89G90:C119U120_BB-0.437-1.4973.2672.35214.43231.219-4.5591.0692.33225.16-4.10134.397
127BA_A103G12:C110A111_BB0.15-3.6173.035-10.1659.87873.138-3.261-0.3992.5628.2148.45374.31
188BB_C19C20:G55G56_BB-0.371-1.5913.306-5.1045.79632.007-3.777-0.1973.00210.3249.09232.902
189BB_C20C21:G54G55_BB-0.214-1.8573.13-0.8672.53527.888-4.3950.2522.9585.2441.79328.014
190BB_C21A22:U53G54_BB0.45-1.3553.2040.6694.62236.349-2.762-0.6283.0237.372-1.06736.638
193BB_C30C31:G49G50_BB-0.044-1.4753.423-6.26717.91827.931-5.256-0.8722.09232.76611.45933.665
194BB_C31G32:C48G49_BB0.035-1.7943.348-4.17714.03529.564-5.338-0.7082.26325.6197.62432.919
170BB_C59G60:C8G9_BB-1.154-1.464.0411.51114.53344.203-3.122.4683.06918.383-14.56147.753
177BB_C66C67:G1G2_BB-0.026-1.5883.4211.3789.54834.476-3.940.2382.8915.732-2.2735.761
178BB_C67C68:G134G1_BB0.854-2.2163.1933.2674.13935.641-4.142-0.942.996.716-5.30136.016
179BB_C68G69:C133G134_BB0.141-1.8553.24-4.384.87130.248-4.368-1.0642.8669.28.27130.933
1101BB_C80A82:U40G42_BB-0.324-4.2575.88411.13126.99373.033-4.6210.7674.26221.855-9.01277.892
1104BB_C86U87:A122G123_BB0.209-1.9973.4792.00726.40331.722-5.325-0.1091.46940.606-3.08741.102
121BB_C97U98:A116G117_BB0.396-1.5523.241-1.1447.01238.226-3.143-0.7272.9110.5961.72938.856
124BB_C100U101:G113G114_BB0.957-1.2113.3233.7522.50636.783-2.249-0.9943.3143.953-5.91937.049
163BB_G12G13:C109C110_AA-0.062-1.6073.1032.7426.34537.743-3.1670.4062.7969.708-4.19638.348
164BB_G13A14:U108C109_AA-0.355-1.723.155-0.4028.12430.087-4.5960.5922.61715.3020.75731.143
166BB_G15G16:C106C107_AA0.23-2.0892.966-1.00111.43722.012-7.473-0.7641.67727.6642.42124.794
167BB_G16C17:G105C106_AA0.703-1.6843.4223.842-2.42132.733-2.52-0.5363.591-4.27-6.77633.038
192BB_G23G24:C51C52_BB0.099-1.7993.4314.076.24329.279-4.7170.6342.97912.104-7.89130.193
195BB_G32U33:A47C48_BB0.055-1.3043.0470.0769.49837.297-3.025-0.0752.64814.564-0.11738.445
198BB_G35A36:A44C45_BB-1.802-1.1093.3555.75716.33619.454-6.255.3411.43539.646-13.97125.992
168BB_G57U58:A10C11_BB0.061-1.7522.818-6.54812.41423.697-5.926-1.311.64127.3714.43527.491
171BB_G60A61:U7C8_BB0.304-1.1352.831-8.50621.07919.01-5.4-1.8770.94546.91918.93229.552
173BB_G62U63:A5U6_BB-0.249-1.0293.1690.7519.76942.246-2.2850.4052.86913.339-1.02643.317
180BB_G69G70:C132C133_BB0.524-1.4414.23410.8310.64538.184-3.5280.7463.72815.543-15.81340.988
181BB_G70U71:A131C132_BB-0.225-0.6782.889-5.52414.57126.61-3.681-0.4872.2328.73910.89530.766
187BB_G76U77:A125C126_BB-0.474-1.2673.03-4.266-3.62121.65-1.955-0.3253.228-9.43911.1222.353
1100BB_G79C80:G42C43_BB1.228-1.5743.071.6632.21825.354-4.154-2.342.9975.035-3.77525.502
1103BB_G83C84:G38C39_BB0.577-2.462.782-3.717-3.58724.632-4.709-2.2982.986-8.2918.59325.159
1106BB_G88A89:U120C121_BB-1.061-1.4023.1691.1898.94333.357-3.6231.9562.67715.236-2.02534.522
1108BB_G90G91:C118C119_BB-0.068-1.7453.241-2.8489.07827.695-5.245-0.4272.54718.2945.73829.253
123BB_G99C100:G114C115_BB-0.083-1.4853.174-0.2172.91634.334-2.9380.1083.0424.9280.36734.454
126BB_G102A103:A111C112_BB-0.3340.2133.2920.99415.056-6.591-10.855-0.4981.148-66.3934.381-16.458
196BB_U33U34:G46A47_BB0.731-1.9462.9895.3734.19837.086-3.501-0.5072.8356.532-8.36137.686
197BB_U34G35:C45G46_BB-0.415-1.9263.2456.30915.30627.463-5.8091.7071.81229.127-12.00531.985
169BB_U58C59:G9A10_BB0.116-1.5453.078-2.2254.6230.074-3.77-0.6212.7998.8234.2530.498
174BB_U63A64:U4A5_BB-0.319-1.1412.9930.45314.5925.561-4.8430.7092.0530.055-0.93329.375
176BB_U65C66:G2A3_BB-0.292-1.1322.9790.3665.9636.585-2.4870.5022.7649.418-0.57837.052
182BB_U71A72:U130A131_BB0.687-1.3682.801-6.50912.97330.055-4.02-2.0181.88223.3811.7333.304
184BB_U73U74:A128G129_BB-1.231-1.6032.66613.37210.60420.932-5.0914.7230.8524.578-30.99426.947
185BB_U74U75:A127A128_BB0.57-0.6383.796.53923.33134.377-3.655-0.0242.87834.659-9.71341.846
186BB_U75G76:C126A127_BB0.22-0.6623.509-10.36818.56629.052-3.78-1.8682.46132.14117.9535.867
1105BB_U87G88:C121A122_BB0.586-1.9092.353.37912.84930.745-4.628-0.6741.50722.937-6.03233.429
122BB_U98G99:C115A116_BB-0.276-1.7623.218-3.0486.14730.848-4.305-0.0232.83611.3795.64331.584
125BB_U101G102:C112G113_BB-0.474-2.0082.8756.70515.45225.485-5.9791.8391.30931.074-13.48430.471

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.