A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
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NDB ID: 7KEE  PDB ID: 7KEE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14R_A5:DT24_T0.403-0.111-1.102-11.224.849-16.621
16R_A7:DT22_T0.265-0.238-0.348-4.043-0.261-1.734
19R_A10:DT19_T0.385-0.3090.208-7.083-18.713-10.272
12R_C3:DG26_T0.053-0.2530.443-12.355-10.556-2.634
13R_G4:DC25_T-0.174-0.146-0.299-10.261-3.202-0.901
15R_G6:DC23_T0.0610.367-0.442-4.5714.969-16.46
17R_G8:DC21_T-0.276-0.157-0.629-1.041.9136.57
18R_G9:DC20_T-0.176-0.156-0.321-3.991-7.1132.986
11R_U2:DA27_T0.8640.1540.342-3.885-6.602-20.626
111T_DA7:DT11_N0.011-0.1620.5021.598-21.442-7.076
113T_DA9:DT9_N-0.033-0.096-0.289-7.772-7.2538.252
114T_DA10:DT8_N0.049-0.175-0.343-7.662-8.2740.19
117T_DA13:DT5_N0.108-0.102-0.761-9.215-17.452-2.446
119T_DA15:DT3_N0.008-0.472-1.269-7.98815.7267.492
116T_DC12:DG6_N0.0660.660.477-0.496-17.99411.868
110T_DG6:DC12_N-0.268-0.2330.3146.985-11.3221.485
115T_DG11:DC7_N-0.211-0.19-0.123-2.643-15.291-2.788
118T_DG14:DC4_N0.521-0.39-1.897-28.2286.03-21.081
112T_DT8:DA10_N-0.242-0.08-0.06-8.957-14.301-5.075

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.