A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Oct-2021 number of released structures: 11724
Search for released structures

NDB ID: 7KEE  PDB ID: 7KEE 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14RR_A5G6:DC23DT24_TT0.295-1.9393.482-5.8555.47829.43-4.785-1.7332.96910.53911.26330.48
16RR_A7G8:DC21DT22_TT1.203-1.6293.4753.6540.91828.415-3.515-1.5413.5451.86-7.40228.659
12RR_C3G4:DC25DG26_TT0.025-0.4233.6031.074.02328.84-1.8020.2063.5128.024-2.13529.133
13RR_G4A5:DT24DC25_TT-0.872-1.2433.8783.433-0.20232.207-2.1882.2723.774-0.363-6.16732.385
15RR_G6A7:DT22DC23_TT0.425-1.9923.1870.8545.96629.547-4.946-0.6572.75211.548-1.65330.142
17RR_G8G9:DC20DC21_TT-0.193-1.943.321-1.2613.05131.081-4.1720.1213.1265.6732.34531.252
18RR_G9A10:DT19DC20_TT-0.164-2.1093.554.2623.04725.286-5.6091.6083.2076.866-9.60425.814
11RR_U2C3:DG26DA27_TT0.241-1.183.5280.0853.42527.557-3.331-0.4813.367.155-0.17727.765
110TT_DA7DT8:DA10DT11_NN0.096-0.6093.4894.269-4.9238.06-0.2660.4243.527-7.478-6.48838.593
112TT_DA9DA10:DT8DT9_NN-1.03-0.0343.293-5.1732.5237.76-0.3790.9043.3913.8667.93738.18
113TT_DA10DG11:DC7DT8_NN-0.904-1.5093.2-9.1864.8628.907-3.795-0.0723.0519.36217.69630.681
116TT_DA13DG14:DC4DT5_NN-0.698-0.9564.382-3.649-1.00939.849-1.2410.4544.448-1.4765.33940.022
115TT_DC12DA13:DT5DG6_NN-0.7221.0864.142-5.637-1.61931.4132.3480.0074.145-2.95710.29931.943
19TT_DG6DA7:DT11DC12_NN-0.143-0.8343.165-5.9383.48632.406-2.026-0.713.0396.15910.49233.111
114TT_DG11DC12:DG6DC7_NN0.3840.9153.3062.893-3.9241.5511.693-0.2353.229-5.502-4.06141.823
117TT_DG14DA15:DT3DC4_NN1.229-0.3433.574-12.2218.44638.784-2.209-2.7882.67625.4216.84144.44
111TT_DT8DA9:DT9DA10_NN0.460.123.468-1.013.06134.708-0.292-0.9313.4515.1171.68934.853

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.