7KTH: Base Pair Morphology Parameters

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As of 17-Aug-2022 number of released structures: 12237

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NDB ID: 7KTH PDB ID: 7KTH

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	T_DA7:DT3_P	0.179	-0.14	0.298	7.488	-13.701	-0.826
1	1	T_DC1:DG4_D	0.034	-0.128	0.275	-9.1	-11.903	-0.426
1	4	T_DC4:DG1_D	0.289	-0.103	-0.244	12.849	2.453	-1.102
1	5	T_DC5:8OG5_P	0.171	-0.183	0.166	-28.881	14.445	-2.528
1	8	T_DC8:DG2_P	0.202	-0.148	-0.136	10.86	-10.337	0.554
1	2	T_DG2:DC3_D	-0.181	-0.142	0.068	-0.107	-8.77	1.257
1	3	T_DG3:DC2_D	-0.185	-0.161	0.122	-0.897	-9.067	-1.631
1	9	T_DG9:DC1_P	-0.16	-0.129	-0.048	-4.583	-10.487	-0.807
1	6	T_DT6:DA4_P	-0.115	-0.126	-0.051	0.128	5.044	0.977

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.