A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: 7KTH  PDB ID: 7KTH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17T_DA7:DT3_P0.179-0.140.2987.488-13.701-0.826
11T_DC1:DG4_D0.034-0.1280.275-9.1-11.903-0.426
14T_DC4:DG1_D0.289-0.103-0.24412.8492.453-1.102
15T_DC5:8OG5_P0.171-0.1830.166-28.88114.445-2.528
18T_DC8:DG2_P0.202-0.148-0.13610.86-10.3370.554
12T_DG2:DC3_D-0.181-0.1420.068-0.107-8.771.257
13T_DG3:DC2_D-0.185-0.1610.122-0.897-9.067-1.631
19T_DG9:DC1_P-0.16-0.129-0.048-4.583-10.487-0.807
16T_DT6:DA4_P-0.115-0.126-0.0510.1285.0440.977

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.