7KTK: Base Pair Morphology Parameters

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As of 17-Aug-2022 number of released structures: 12237

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NDB ID: 7KTK PDB ID: 7KTK

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	T_DA7:DT3_P	0.207	-0.117	-0.02	16.009	-5.838	1.346
1	1	T_DC1:DG4_D	0.169	-0.142	0.324	-8.774	-13.333	-1.531
1	4	T_DC4:DG1_D	0.236	-0.119	-0.173	12.793	0.286	-1.563
1	7	T_DC8:DG2_P	0.267	-0.178	-0.059	15.542	-16.877	-0.607
1	2	T_DG2:DC3_D	-0.169	-0.127	-0.052	-1.705	-4.615	-0.886
1	3	T_DG3:DC2_D	-0.167	-0.127	0.126	-0.093	-5.481	-1.437
1	8	T_DG9:DC1_P	-0.14	-0.167	0.132	-0.254	-13.125	-1.42
1	5	T_DT6:DA4_P	-0.046	-1.019	-0.177	-14.173	7.416	-169.729

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.