A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Oct-2021 number of released structures: 11724
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NDB ID: 7KUP  PDB ID: 7KUP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A9:U16_B0.051-0.1070.0345.427-10.332-4.692
16A_A13:U12_B-0.151-0.1820.1-0.937-11.5374.666
17A_A14:U11_B0.124-0.164-0.053-0.167-13.6981.615
13A_C10:G15_B0.159-0.154-0.0698.909-17.928-1.054
110A_C17:LCG4_B0.243-0.1770.1470.938-12.589-1.103
18A_G15:C10_B-0.148-0.148-0.055-8.831-17.515-1.13
11A_LCG4:C17_B-0.237-0.1930.122-1.037-12.112-1.36
14A_U11:A14_B-0.186-0.168-0.0660.777-14.4681.967
15A_U12:A13_B0.164-0.1980.0780.748-11.7524.245
19A_U16:A9_B-0.031-0.120.047-5.552-10.505-5.013

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.