A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
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NDB ID: 7KUP  PDB ID: 7KUP 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12AA_A9C10:G15U16_BB0.467-1.5873.1950.663.17832.333-3.369-0.7253.0385.69-1.18232.491
16AA_A13A14:U11U12_BB-0.024-1.0853.2562.637.81932.693-3.0930.4522.91613.623-4.58133.69
17AA_A14G15:C10U11_BB0.353-1.7253.4282.48511.67630.067-5.086-0.2112.61421.472-4.5732.299
13AA_C10U11:A14G15_BB-0.329-1.7073.412-2.22611.84529.561-5.160.2132.57222.0934.15131.873
18AA_G15U16:A9C10_BB-0.443-1.5983.199-0.5333.11132.08-3.4080.7073.0415.6120.96132.231
11AA_LCG4A9:U16C17_BB-0.808-1.4883.085-1.8584.70731.817-3.4521.1532.8828.5193.36232.206
14AA_U11U12:A13A14_BB0.017-1.093.287-2.5947.79333.053-3.066-0.4292.95113.4414.47434.03
15AA_U12A13:U12A13_BB0.023-1.4333.199-0.07815.80728.734-4.928-0.0532.14129.2260.14532.715
19AA_U16C17:LCG4A9_BB0.816-1.4943.071.8324.85931.956-3.462-1.1692.8598.753-3.30132.365

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.