A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Oct-2021 number of released structures: 11724
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NDB ID: 7OA3  PDB ID: 7OA3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A5:U48_A0.09-0.234-0.036-4.137-1.4559.159
117A_A20:U27_A-0.576-0.373-0.113-9.462-0.626-2.745
12A_C3:G50_A-0.621-0.097-0.91516.862-18.137-9.649
16A_C7:G46_A-1.0310.3270.069-2.932-14.1815.636
113A_C16:G39_A-1.5950.352-0.15912.704-14.39211.736
115A_C18:G29_A0.5840.122-0.47915.677-23.3362.071
116A_C19:G28_A1.682-0.369-0.0551.673-18.8591.124
11A_G2:C51_A-0.8940.092-0.4191.032-18.805-5.052
15A_G6:C47_A-0.098-0.238-0.103-1.157-12.3332.663
18A_G10:C44_A0.4730.116-0.547-24.716-17.383-1.457
19A_G12:G9_A-2.171-3.1620.291-2.5553.6690.039
120A_G14:G31_A-3.194-7.859-0.049-5.6618.474-177.624
112A_G15:C40_A-0.260.1250.14110.182-2.595-0.527
114A_G17:U30_A-2.617-0.534-0.0669.523-7.454-4.278
118A_G21:C26_A-1.389-0.507-0.377-4.849-8.195-4.388
111A_G41:G37_A-2.118-2.644-0.085-8.9734.12187.002
110A_G42:G36_A1.7723.3990.916-12.2526.831-87.19
13A_U4:A49_A-0.079-0.003-0.269-1.496-4.2889.124
17A_U8:G45_A1.959-0.1830.35-5.625-4.7043.623
119A_U22:G25_A1.916-4.046-0.049-3.412-10.779-97.718
124B_A5:U48_B1.1110.066-0.039-6.4322.20511.978
137B_A20:U27_B-0.427-0.363-0.407-11.7910.842-6.212
122B_C3:G50_B-1.9210.243-1.75720.03-17.539-16.2
126B_C7:G46_B-1.3360.2160.006-0.378-11.04112.699
133B_C16:G39_B-0.236-0.16-0.11514.835-10.8062.551
135B_C18:G29_B0.5280.23-0.5116.421-23.2057.032
136B_C19:G28_B1.757-0.403-0.1420.757-17.5690.329
121B_G2:C51_B-1.6390.289-0.9458.95-19.709-13.619
125B_G6:C47_B0.0490.04-0.17-3.558-10.5136.614
128B_G10:C44_B0.3740.145-0.488-23.416-19.483-2.619
129B_G12:G9_B-1.574-3.4080.403-2.3834.6592.392
140B_G14:G31_B-3.27-7.878-0.136-9.65416.263-178.566
132B_G15:C40_B-0.1150.2190.28410.34-1.0350.565
134B_G17:U30_B-3.123-0.571-0.12312.449-8.360.494
138B_G21:C26_B-0.936-0.536-0.238-5.786-9.599-5.792
131B_G41:G37_B-2.538-2.482-0.07-6.7157.92184.056
130B_G42:G36_B1.3122.8410.949-7.4598.92-90.915
123B_U4:A49_B0.7890.896-0.236-5.594-6.76616.991
127B_U8:G45_B1.715-0.1920.247-2.492-5.3311.96
139B_U22:G25_B1.732-4.1120.109-5.71-10.05-100.139

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.