A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Oct-2021 number of released structures: 11724
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NDB ID: 7OM7  PDB ID: 7OM7 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11E_A3:U8_F-0.533-0.315-0.551-15.50610.975-1.433
12E_A4:U7_F-0.494-0.2770.382.86-0.7165.122
13E_A5:U6_F-0.195-0.167-0.1461.512-5.3423.555
14E_U6:A5_F-0.152-0.114-0.2673.392-8.055-2.672
15E_U7:A4_F0.032-0.1750.065-1.886-14.6375.276
16E_U8:A3_F0.406-0.063-0.039-4.36-13.4573.993
17G_A3:U8_H-0.616-0.133-0.184-6.3991.667-2.462
18G_A4:U7_H-0.298-0.092-0.107-2.177-3.4254.233
19G_A5:U6_H-0.476-0.154-0.1930.284-3.7951.812
110G_U6:A5_H-0.026-0.104-0.1596.199-6.227-1.229
111G_U7:A4_H0.084-0.1160.164-2.497-12.7243.809
112G_U8:A3_H0.444-0.1310.142-5.037-1.5812.003
113I_A3:U8_J-0.103-0.053-0.401-5.084-2.6430.114
114I_A4:U7_J0.498-0.1380.0750.513-10.0563.092
115I_A5:U6_J0.109-0.1820.0-0.824-6.324-2.729
116I_U6:A5_J0.615-0.292-0.0281.512-3.9581.718
117I_U7:A4_J0.504-0.4030.0174.322-2.4294.318
118I_U8:A3_J0.576-0.5430.0265.5571.9631.208
119K_A3:U8_L-0.0560.0960.172-2.2982.8133.912
120K_A4:U7_L0.198-0.0870.2890.906-11.2680.205
121K_A5:U6_L-0.144-0.1650.018-4.768-10.857-3.673
122K_U6:A5_L0.341-0.2420.171-3.582-6.5211.413
123K_U7:A4_L-0.03-0.3710.4162.896-2.5133.928
124K_U8:A3_L-0.353-0.337-0.80728.6657.113-5.075

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.